Locus 676

Sequence ID X_DroMel_CAF1
Location 1,873,858 – 1,873,959
Length 101
Max. P 0.680627
window1087

overview

Window 7

Location 1,873,858 – 1,873,959
Length 101
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 80.48
Mean single sequence MFE -42.92
Consensus MFE -26.46
Energy contribution -26.72
Covariance contribution 0.25
Combinations/Pair 1.25
Mean z-score -1.79
Structure conservation index 0.62
SVM decision value 0.31
SVM RNA-class probability 0.680627
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1873858 101 + 22224390
AGCUGAACAGGAGCAGCAACGGAGGAGUAAGCGGUAGUGGCGGCCUGCCUACUGGUACAGUUAUCCAUGGAGGCUGUGGCUCCUCUUCAGCUUCUUCCACG
.((((........))))...(((((((((((.((.(((.(((((((.((...(((.........))).))))))))).))))).)))..)).))))))... ( -39.40)
>DroPse_CAF1 3412 92 + 1
AGCUCAAUCGGAGCAGCAACGGGGGAGCCAGCGGAAGUGGCGGAGUGCCCACGGGGACUGUCAUCCACGG---CAGCGGCUCCUCC---GGC---UCCUCA
.........(((((.....((((((((((.((.(..((((.(.(((.((....)).))).)...))))..---).)))))))))))---)))---)))... ( -45.10)
>DroSec_CAF1 11171 101 + 1
AGCUGAACAGGAGCAGCAACGGAGGAGUGAGCGGUAGUGGCGGCUUGCCUACUGGUACAGUUAUCCAUGGGGGCUGUGGCUCCUCUUCCGCUUCUUCCACG
.((((........))))...((((((...(((((.((.((.((((.(((..((((.........))).)..)))...)))))).)).)))))))))))... ( -40.00)
>DroEre_CAF1 9830 101 + 1
AGCUGAACAGGAGCAGCAAUGGAGGAGUGGGCGGUAGUGGCGGCCUGCCUACUGGUACAGUUAUCCAUGGGGGCAGCGGCUCCUCCUCUGCUUCUUCCACG
........((((((((....((((((((.(((.((....)).))(((((..((((.........))).)..)))))).)))))))).))))))))...... ( -43.00)
>DroYak_CAF1 11966 101 + 1
AGUUGAACAGGAGCAGCAAUGGAGGAGUGGGCGGUAGUGGCGGCCUGCCAACUGGUACAGUUAUCCAUGGUGGCAGCGGCUCCUCCUCCGCAUCCUCCACG
.((((........))))..((((((((((((.((.((..((.((.(((((..(((.........)))...))))))).))..))))))))).))))))).. ( -44.90)
>DroPer_CAF1 3400 92 + 1
AGCUCAAUCGGAGCAGCAACGGGGGAGCCAGCGGAAGUGGCGGAGUGCCCACGGGGACUGUCAUCCACGG---CAGCGGCUCCUCC---GGC---UCCUCA
.........(((((.....((((((((((.((.(..((((.(.(((.((....)).))).)...))))..---).)))))))))))---)))---)))... ( -45.10)
>consensus
AGCUGAACAGGAGCAGCAACGGAGGAGUGAGCGGUAGUGGCGGCCUGCCUACUGGUACAGUUAUCCAUGG_GGCAGCGGCUCCUCCUC_GCUUCUUCCACG
.........((((..((...((((((((..((.((.((((.(((..(((....)))...)))..))))....)).)).))))))))...))...))))... (-26.46 = -26.72 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:53 2006