Locus 674

Sequence ID X_DroMel_CAF1
Location 1,871,097 – 1,871,187
Length 90
Max. P 0.866751
window1085

overview

Window 5

Location 1,871,097 – 1,871,187
Length 90
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 81.27
Mean single sequence MFE -39.98
Consensus MFE -25.22
Energy contribution -26.30
Covariance contribution 1.08
Combinations/Pair 1.19
Mean z-score -2.51
Structure conservation index 0.63
SVM decision value 0.85
SVM RNA-class probability 0.866751
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1871097 90 + 22224390
GACACCGAGGAACCAACGGGAUCGGGUGGCCAAAGAAAGAGCUCCGUGGAGCGAUCUUUGG------CGCCCGUUAUACGCGGACGAAAGUCCAUC
((..(((.(....)..)))..))(((((.(((((((....((((....))))..)))))))------))))).........((((....))))... ( -40.60)
>DroPse_CAF1 642 96 + 1
GACGGAGAAGAGCCGCCAUCGUCGGGCAGUCAGAGGAAGAGCUCGGUGGAGCGCUCGGUUGUUGCCCCCCCCGUCAUACGCGGACGCAAGUCCAUU
(((((....((((.((..((..(((((..((....))...)))))..)).))))))(((....)))....)))))......((((....))))... ( -38.90)
>DroSec_CAF1 8422 90 + 1
GACGCCGAGGAACCAACGGGAUCGGGUAGCCAAAGGAAGAGCUCCGUGGAGCGAUCUUUGG------CGCCCGUUAUACGCGGACGAAAGUCCAUC
...((....((.((....)).))((((.((((((((....((((....))))..)))))))------))))).......))((((....))))... ( -39.00)
>DroEre_CAF1 7039 90 + 1
GAUAACGAGGAGCCAACGGGAUCGGGUGGCCAAAGAAAGAGCUCCGUGGAGCGAUCUUUGG------CACCCGUUAUACGCGGACGGAAGUCCAUC
.(((((...((.((....)).))(((((.(((((((....((((....))))..)))))))------))))))))))....((((....))))... ( -41.90)
>DroYak_CAF1 9000 90 + 1
GACACCGAGGAGCCAACGGGAUCGGGUGGCCAAAGAAAGAGCUCCGUGGAGCGGUCUUUGG------CGCCCGUUAUACGCGGACGGAAGUCCAUC
((..(((.(....)..)))..))(((((.(((((((....((((....))))..)))))))------))))).........((((....))))... ( -41.70)
>DroPer_CAF1 642 96 + 1
GACGGCGAAGAGCCGCCAUCGUCGGGUAGUCAGAGGAAGAGCUCGGUGGAGCGCUCGGUUGUUGCCCCCCCCGUCAUACGCGGACGCAAGUCCAUU
(((((((......))))......((((((.(((..((.(.((((....)))).)))..))))))))).....)))......((((....))))... ( -37.80)
>consensus
GACACCGAGGAGCCAACGGGAUCGGGUAGCCAAAGAAAGAGCUCCGUGGAGCGAUCUUUGG______CGCCCGUUAUACGCGGACGAAAGUCCAUC
(((......((.((....)).))((((..(((((((....((((....))))..))))))).......)))))))......((((....))))... (-25.22 = -26.30 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:51 2006