| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,867,332 – 1,867,439 |
| Length | 107 |
| Max. P | 0.518568 |
| Location | 1,867,332 – 1,867,439 |
|---|---|
| Length | 107 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.77 |
| Mean single sequence MFE | -32.43 |
| Consensus MFE | -16.45 |
| Energy contribution | -16.90 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.51 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.518568 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1867332 107 - 22224390 CCCGCCCAAGGACCAUUGCGAUUAUGUAGAUGCCGACAUUUGUAUGUUCUUAUGUAC-------------AUAUGGAUAUAUGUACGUGUAACUGGGUUAAAGGCAAAGGCCUUAAUUGC ...((((((((((...(((((..((((........))))))))).)))))(((((((-------------((((....)))))))))))....)))))..(((((....)))))...... ( -30.00) >DroSec_CAF1 4563 115 - 1 CCCGCCCAAGGACCAUUGCGAUUAUGUAGAUGCCGACAUUUGUAUGCUCAUAUGUAC----AUACAUA-CAUAUGUAUAUAUUUACGUGUAACUGGGUUAAAGGCAAGGGCCUUAAUUGC ((((((....((((.((((((.((((((((((....)))))))))).))((((((((----(((....-..)))))))))))......))))...))))...)))..))).......... ( -29.20) >DroEre_CAF1 3186 104 - 1 CCCGCCCAAGGACCAUUGCGAUUAUGUAGAUGCAGGCAUA----------------CAUAUGUAUGUAUUGUAUGUGCAUGUGUACGUGGAACUGGGUUAAAGGCAAAGGCCUUAAUUGC ...(((((.(..((((((((..((((((.(((((((((((----------------(....)))))).)))))).)))))))))).))))..))))))..(((((....)))))...... ( -38.10) >consensus CCCGCCCAAGGACCAUUGCGAUUAUGUAGAUGCCGACAUUUGUAUG_UC_UAUGUAC_____UA__UA__AUAUGUAUAUAUGUACGUGUAACUGGGUUAAAGGCAAAGGCCUUAAUUGC ...(((((...............((((........))))...............................((((((((....))))))))...)))))..(((((....)))))...... (-16.45 = -16.90 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:46 2006