Locus 67

Sequence ID	X_DroMel_CAF1
Location	311,363 – 311,457
Length	94
Max. P	0.999848

overview

Window 1

Location	311,363 – 311,457
Length	94
Sequences	5
Columns	94
Reading direction	reverse
Mean pairwise identity	95.32
Mean single sequence MFE	-21.85
Consensus MFE	-20.16
Energy contribution	-20.16
Covariance contribution	0.00
Combinations/Pair	1.08
Mean z-score	-2.61
Structure conservation index	0.92
SVM decision value	4.24
SVM RNA-class probability	0.999848
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 311363 94 - 22224390
ACUCCCCUGUUCUUUGGACAUUCGAAUCGAAGAAUCAAUGUUUACCCAAAACAUGAAAAGGAACAGGACAAACGCCCCAAGCAAACAAUGGCAU
.....((((((((((.((..((((...))))...)).((((((.....))))))...))))))))))......(((.............))).. ( -20.72)
>DroSec_CAF1 54359 94 - 1
ACUCCCCUGUUCUUUGGACAUUCGAAUCGAAGGAUCAAUGUUUACCCAAAACAUAAAAAGGAACAGGACCAACGCCCCAAGCAAACAAUGGCAU
.....((((((((((........((.((....)))).((((((.....))))))...))))))))))......(((.............))).. ( -21.82)
>DroSim_CAF1 75009 94 - 1
ACUCCCCUGUUCUUUGGACAUUCGAAUCGAAGGAUCAAUGUUUACCCAAAACAUAAAAAGGAACAGGACCAACGCCCCAAGCAAACAAUGGCAU
.....((((((((((........((.((....)))).((((((.....))))))...))))))))))......(((.............))).. ( -21.82)
>DroEre_CAF1 55101 94 - 1
ACUCCCCUGUUCCUUGGACAUUCGAAUCGAAGGAUCAAUGUUUACCCAAAACAUAAAGAGGAACAGGACAAACGCCCCAAGCAAACAAUGGCAU
.....((((((((((........((.((....)))).((((((.....))))))...))))))))))......(((.............))).. ( -24.92)
>DroYak_CAF1 75561 94 - 1
ACUCCCCUGUUCUUUGGACAUUCGAAUCGAAGGAUCGAUGUUAACCUAAAACAUAAAGAGAAACAGGACAAACGCCCCAAGCAAACAAUGGCUU
.....((((((((((.(((((.(((.((....))))))))))..............)))).))))))......(((.............))).. ( -19.98)
>consensus
ACUCCCCUGUUCUUUGGACAUUCGAAUCGAAGGAUCAAUGUUUACCCAAAACAUAAAAAGGAACAGGACAAACGCCCCAAGCAAACAAUGGCAU
.....((((((((((.((..((((...))))...)).((((((.....))))))...))))))))))......(((.............))).. (-20.16 = -20.16 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:50 2006