Locus 669

Sequence ID X_DroMel_CAF1
Location 1,867,118 – 1,867,212
Length 94
Max. P 0.655109
window1079

overview

Window 9

Location 1,867,118 – 1,867,212
Length 94
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 82.40
Mean single sequence MFE -21.30
Consensus MFE -16.98
Energy contribution -17.73
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -1.59
Structure conservation index 0.80
SVM decision value 0.25
SVM RNA-class probability 0.655109
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1867118 94 - 22224390
ACUUCCAUUUCCGUCGCCACUGACAUCACCAACUAGUAACCAAGGCCAUUGCGAUCGAUUAUCCUAGUUGCUUGCCCGCCCUGGC--------------------------GUCUUUCUU
............(.((((((((...........))))......(((....((((.((((((...)))))).))))..)))..)))--------------------------).)...... ( -17.60)
>DroSec_CAF1 4349 94 - 1
ACUUCCAUUUCCGUCGCCACUGACAUCACCAACUCGUAACCAAGGCCAUUGCGACCGAUUAUCCUAGUUGCUUGCCCGCCCUGGC--------------------------GUCUUUCUU
............(.(((((.((....))...............(((....((((.((((((...)))))).))))..))).))))--------------------------).)...... ( -17.10)
>DroEre_CAF1 2972 94 - 1
ACUUCCAUUUCCCUCGCCACUGACAUCACCAACUAGUAACCAAGGCCACUGCGAUCGAUUAUCCUAGUUGCUUGCCCGCCUUGGC--------------------------GGCUUUCUU
...............(((((((...........))))..(((((((....((((.((((((...)))))).))))..))))))).--------------------------)))...... ( -23.10)
>DroYak_CAF1 4846 120 - 1
ACUUCCAUUUCCGUCGCCACUGACAUCAUUAUCUAGUAACCAAGGCCACUGCGAUCGAUUAUCCUAGUUGCUUGCCCGCCUUGGCUUGCCCGCCUUGGCGCCUUUUUUCGCAUCUUUCAU
............(.(((((.((....)).......(((((((((((....((((.((((((...)))))).))))..))))))).))))......))))).).................. ( -27.40)
>consensus
ACUUCCAUUUCCGUCGCCACUGACAUCACCAACUAGUAACCAAGGCCACUGCGAUCGAUUAUCCUAGUUGCUUGCCCGCCCUGGC__________________________GUCUUUCUU
............((((....))))...............(((((((....((((.((((((...)))))).))))..))))))).................................... (-16.98 = -17.73 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:45 2006