Locus 666

Sequence ID X_DroMel_CAF1
Location 1,863,657 – 1,863,776
Length 119
Max. P 0.688496
window1070

overview

Window 0

Location 1,863,657 – 1,863,776
Length 119
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 96.66
Mean single sequence MFE -25.81
Consensus MFE -23.34
Energy contribution -23.45
Covariance contribution 0.11
Combinations/Pair 1.03
Mean z-score -1.95
Structure conservation index 0.90
SVM decision value 0.32
SVM RNA-class probability 0.688496
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1863657 119 - 22224390
AAACCAUAUUGUAUACUUAUAUAAAAGGUAAAACUCGCUGGCGACCGCUAUGUAGAAUUAGAAAUGCACAAAA-AAAACAGUAUUUCUAUAAUUUUCCACGGCGAUUUGUUAUGUGUUUU
..(((...((((((....))))))..)))(((((.((.((((((.(((..((.((((((((((((((......-......)))))))))..))))).))..)))..)))))))).))))) ( -26.00)
>DroSec_CAF1 1151 119 - 1
AAACCAUAUUGUAUACUUAUAUAAAAGGUAAAAGUCGCUGGCGACUGCUAUGUAGAAUUAGAAAUGCACAAAA-AAAACAGUAUUUCUAUAAUUUUCCACGGCGAAUUGUUAUGUGUUUC
((((((((.....(((((.......)))))..(((((....)))))((..((.((((((((((((((......-......)))))))))..))))).))..)).......)))).)))). ( -24.80)
>DroYak_CAF1 1256 120 - 1
AAACCAUAUUGUAUACUUAUAUAAAAGGUAAAAGUCGCUGGCGACCGCUAUGUAGAAUUAGAAAUGCACAAAAAAAAACAGUAUUUCUAUAAUUUUCCACGGCGAUUGGUUAUGUGUUUC
.(((((.......(((((.......)))))...((((....))))(((..((.((((((((((((((.............)))))))))..))))).))..)))..)))))......... ( -26.62)
>consensus
AAACCAUAUUGUAUACUUAUAUAAAAGGUAAAAGUCGCUGGCGACCGCUAUGUAGAAUUAGAAAUGCACAAAA_AAAACAGUAUUUCUAUAAUUUUCCACGGCGAUUUGUUAUGUGUUUC
((((((((.....(((((.......)))))...((((....))))(((..((.((((((((((((((.............)))))))))..))))).))..)))......)))).)))). (-23.34 = -23.45 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:38 2006