| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,862,886 – 1,863,006 |
| Length | 120 |
| Max. P | 0.983621 |
| Location | 1,862,886 – 1,863,006 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.28 |
| Mean single sequence MFE | -30.63 |
| Consensus MFE | -21.88 |
| Energy contribution | -23.16 |
| Covariance contribution | 1.28 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.54 |
| Structure conservation index | 0.71 |
| SVM decision value | 1.95 |
| SVM RNA-class probability | 0.983621 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1862886 120 - 22224390 CCAGAUGGUACGGUUGGGGUCUUCAGACCCCACUAAGUCCCACUGCUUAUACUCAUGUAUUUACAAAGACACUUCUUCUUCUUCAGCGGGAGCAAUUGUCCAUCUGACCCUAGCCCUGAU .(((((((.((((((((((((....))))))......((((.(((...((((....)))).....((((....))))......))).))))..))))))))))))).............. ( -38.40) >DroSec_CAF1 387 120 - 1 CCAGAUGGUACGGUUGGGGUCUUCAGACCCCAUAAAGUCACACUGCUUAUACUCAUGUAUUUACAAAGACACUUCUUCUUCUUCAGCGGGAGCAAUUGGCCAUCUGACCCUAGCCCUGAU .((((((((.(((((((((((....)))))).....(((....((...((((....))))...))..))).(((((.((.....)).))))).))))))))))))).............. ( -34.00) >DroYak_CAF1 441 97 - 1 CCAGAUGGAAC--------------------ACCAAGUCCCACUUCUUAUUCUCAUGUAUUUACAAAGACACUUCU---GCUCCAGCGGUAGCAAUUGUCCAUCUGACCCUGGCCCUAAU .((((((((.(--------------------(....(((........(((......)))........))).((.((---((....)))).))....)))))))))).............. ( -19.49) >consensus CCAGAUGGUACGGUUGGGGUCUUCAGACCCCACAAAGUCCCACUGCUUAUACUCAUGUAUUUACAAAGACACUUCUUCUUCUUCAGCGGGAGCAAUUGUCCAUCUGACCCUAGCCCUGAU .((((((((.....(((((((....)))))))....(((.........((((....)))).......)))...............((....)).....)))))))).............. (-21.88 = -23.16 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:37 2006