| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,861,355 – 1,861,460 |
| Length | 105 |
| Max. P | 0.979063 |
| Location | 1,861,355 – 1,861,460 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 91.44 |
| Mean single sequence MFE | -34.93 |
| Consensus MFE | -31.91 |
| Energy contribution | -31.47 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.07 |
| Mean z-score | -3.00 |
| Structure conservation index | 0.91 |
| SVM decision value | 1.83 |
| SVM RNA-class probability | 0.979063 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1861355 105 + 22224390 GGGUGGUGGGGUGAGCGGUAACGAAGAUCGGUAACGGAAGUGGAGACAAAGCGGAACCGGAAA------CGGGAGCUGGACUGCCAGAUCGGAAUCACACAUCAACCAUUA ((.(((((..((((.((....))..((((((((((....))(....)..(((....(((....------)))..)))....)))).))))....)))).))))).)).... ( -36.90) >DroSec_CAF1 4533 104 + 1 GGGUGGUGGGGUGAGCGGUAACGAAAAUCGGUAAUGGAAGUGGAGACAAAGCGGAACCGGAAA------CGGAAGCUGGACUGCCAGAUCGGAAUCACACAUCAACCAUU- ((.(((((..((((.((....))....(((((..(((.((((....)..(((....(((....------)))..)))..))).))).)))))..)))).))))).))...- ( -33.70) >DroEre_CAF1 7044 111 + 1 GGGUGGUGGGGUGAGCGGUAACGAAGAUCGGUAACGGAAGUGGAUAUAAAACGGAACCGGAAACGGAAACGGAAACUGGACUGCCAGAUCGGAAUCACACAUCAACCAUUA .((((((..((((.(.(((..(((...((.((.((....))...............(((....)))..)).))..((((....)))).)))..))).).)))).)))))). ( -34.20) >consensus GGGUGGUGGGGUGAGCGGUAACGAAGAUCGGUAACGGAAGUGGAGACAAAGCGGAACCGGAAA______CGGAAGCUGGACUGCCAGAUCGGAAUCACACAUCAACCAUUA .((((((..((((.(.(((..(((...(((((..((....((....))...))..)))))...............((((....)))).)))..))).).)))).)))))). (-31.91 = -31.47 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:36 2006