| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,859,004 – 1,859,096 |
| Length | 92 |
| Max. P | 0.941261 |
| Location | 1,859,004 – 1,859,096 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 69.76 |
| Mean single sequence MFE | -38.47 |
| Consensus MFE | -16.88 |
| Energy contribution | -17.00 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.41 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.44 |
| SVM decision value | 1.32 |
| SVM RNA-class probability | 0.941261 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1859004 92 - 22224390 UGUUGCUGCUUUGGGAAUAA---U-----CCCUG------GCAGUGUCGCAGC---UGGCCGAGGAGCGGGCUAUUUGCUCGGCUGCCGCCGUCAAGGUGGCCAACGUC .(((((((((..((((....---)-----))).)------)))).((((.(((---(((((........)))))...))))))).((((((.....))))))))))... ( -39.90) >DroPse_CAF1 3172 95 - 1 UGUUGUUGCUGUGGGAGUAG---U-----CCAUG------GCAGUGUCGUUGGCUGUGGUCGAUGAUCGUGCAAUCUGCUCGGCAGCUGCCGUGAGGGUGGCCAAAGUG .......(((...((..((.---(-----(((((------((((((((((((((....)))))))))((.((.....)).))...))))))))).)).)).))..))). ( -35.50) >DroSec_CAF1 2279 92 - 1 UAUUGCUGCUUUGGGAGUAA---U-----CCCUG------GCAGUGUCGCAGC---UGGCCGAGGAACGGGCUAUUUGCUCGGCUGCCGCCGUCAAGGUAGCCAACGUG ....((((((..((((....---)-----))).)------)))))...((((.---(((((........))))).))))..(((((((........)))))))...... ( -42.50) >DroEre_CAF1 4734 92 - 1 UGUUGCUGCUGUGGGAAUAA---U-----CCCUG------GCAGUUUCGCAGC---CGGCCGAGGAGCGGGCUAUCUGCUCGGCUGCCGCCGUCAGGGUGGCCAACGUG .(((((.(((((((((....---)-----)))..------)))))...)))))---.(((((((.((........)).)))))))((((((.....))))))....... ( -41.20) >DroWil_CAF1 2580 106 - 1 UGUUGCUGCUGUGCCACUUGCAACUGUUGCCAUGGUUGUAGCAGUUGCUGUGG---CUGUGGCUGACCGUGCUAUCUGCUCGGCUGCUGCUGUCAGAGUGGCCAAAGUG ....(((..((.((((((((((((((((((.......)))))))))))..(((---(.(..((.(.(((.((.....)).)))).))..).))))))))))))).))). ( -49.30) >DroAna_CAF1 5997 77 - 1 UACCACUACUCUGCGAGUAA---U-----CCCUG------GCAGUAUCUC------------------UGGCUAUCUGCUCAGCAGCCGCUGUUAGAGUCGCCAAUGUG ...(((....((((.((...---.-----..)).------))))......------------------((((..((((..((((....)))).))))...))))..))) ( -22.40) >consensus UGUUGCUGCUGUGGGAGUAA___U_____CCCUG______GCAGUGUCGCAGC___UGGCCGAGGAGCGGGCUAUCUGCUCGGCUGCCGCCGUCAGGGUGGCCAACGUG ....(((((...............................)))))........................((((((((...((((....))))...))))))))...... (-16.88 = -17.00 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:35 2006