Locus 662

Sequence ID X_DroMel_CAF1
Location 1,856,341 – 1,856,439
Length 98
Max. P 0.567398
window1066

overview

Window 6

Location 1,856,341 – 1,856,439
Length 98
Sequences 3
Columns 98
Reading direction forward
Mean pairwise identity 79.93
Mean single sequence MFE -41.67
Consensus MFE -32.31
Energy contribution -32.77
Covariance contribution 0.45
Combinations/Pair 1.21
Mean z-score -1.36
Structure conservation index 0.78
SVM decision value 0.07
SVM RNA-class probability 0.567398
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1856341 98 + 22224390
AAUUGCCGCCCGGCCAGCUGCAGGCUCUGAAUCUCAGUGCCCAACAGCAGCAGUGGGGCAGCAGCAACUCCACGGGUCUUGGUGGCGUAGGCGGCGGC
..((((((((..(((((((((.(((.(((.....))).))).....))))).((((((.........)))))).........))))...)))))))). ( -44.80)
>DroSec_CAF1 57326 98 + 1
AAUUGCCGCCCGGCCAGCUGCAGGCUCUGAAUCUUAGUGCCCAGCAGCAGCAGUGGGGCAGCAGCAACUCCACGGGUCUUGGUGGCGUAGGCGGCGGC
..((((((((..(((((((((.(((.((((...)))).)))..))))).((.((((((.........))))))..)).....))))...)))))))). ( -44.30)
>DroWil_CAF1 90789 92 + 1
AGCUGCCGCCUGGCCAGGUGCAAGCUCUCAAUCUCAGUGCUCA---ACAGCAAUGGGGCAGCUCAAAUUC---GGGUUCCGGCUCUAUAGGUGGCGGC
.((((((((((((((.((.............(((((.((((..---..)))).))))).(((((......---)))))))))))....)))))))))) ( -35.90)
>consensus
AAUUGCCGCCCGGCCAGCUGCAGGCUCUGAAUCUCAGUGCCCA_CAGCAGCAGUGGGGCAGCAGCAACUCCACGGGUCUUGGUGGCGUAGGCGGCGGC
....((((((..(((.(((((.(((.(((.....))).)))........((......)).))))).((.((((.(....).)))).)).))))))))) (-32.31 = -32.77 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:34 2006