Locus 66

Sequence ID	X_DroMel_CAF1
Location	305,785 – 305,901
Length	116
Max. P	0.583508

overview

Window 0

Location	305,785 – 305,901
Length	116
Sequences	4
Columns	116
Reading direction	forward
Mean pairwise identity	87.79
Mean single sequence MFE	-27.81
Consensus MFE	-19.59
Energy contribution	-19.90
Covariance contribution	0.31
Combinations/Pair	1.17
Mean z-score	-1.60
Structure conservation index	0.70
SVM decision value	0.10
SVM RNA-class probability	0.583508
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 305785 116 + 22224390
UAUCAAUUACAGAAAUUUUAUUACCCAGAGCAACGCCGAGUUGCAGUGGAACAUGGUAUCAAGCUAUUAGGCCGUCUAACGUAUUUUACGCCCUAUAGGGGCAAAUGUAGAUAUAA
......(((((..................(((((.....))))).((((((.(((.......(((....))).......))).))))))((((.....))))...)))))...... ( -25.24)
>DroSec_CAF1 48826 116 + 1
UAUCAAUUACAGAAAUGUUAUUACCAAGAGCAACGUCCACUUGAAGUGGACCUUGGUAUCAAGCUAUUAGGCCGUCUAACGUACAUUGCGUCCUAUAAGGGCAAAUGUAGAUAUAA
((((..........((((((.(((((((......((((((.....)))))))))))))....(((....)))....))))))(((((..((((.....)))).))))).))))... ( -31.70)
>DroSim_CAF1 69485 116 + 1
UAUCAAUUACAGAAAUGUUAUUACCAAGAGCAACGUCCACUUGCAGUGGACCUUGGUAUCCAGCUAUUAGGCCGUCUAACGUACAUUGCGUCCUAUAAGGGCAAAUGUAGAUAUAA
((((..........((((((.(((((((......((((((.....)))))))))))))....(((....)))....))))))(((((..((((.....)))).))))).))))... ( -31.70)
>DroEre_CAF1 49570 116 + 1
UAUCAAUUACAGAAAUUUCAUUACCGAGAGCUACGUCGAUUUACAGUGGAAUAUGGUACCAAGCUAUUAAGCCGUCUAACAUCCAUUACGCCCUAAGAGGGCAAAUGUAGAUAUUA
...............((((......)))).((((((........((((((...(((.((...(((....))).)))))...))))))..((((.....))))..))))))...... ( -22.60)
>consensus
UAUCAAUUACAGAAAUGUUAUUACCAAGAGCAACGUCCACUUGCAGUGGAACAUGGUAUCAAGCUAUUAGGCCGUCUAACGUACAUUACGCCCUAUAAGGGCAAAUGUAGAUAUAA
((((......(((........(((((((..(.((...........)).)..)))))))....(((....)))..)))....((((((..((((.....)))).))))))))))... (-19.59 = -19.90 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:49 2006