| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,839,111 – 1,839,206 |
| Length | 95 |
| Max. P | 0.892667 |
| Location | 1,839,111 – 1,839,206 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 71.33 |
| Mean single sequence MFE | -30.05 |
| Consensus MFE | -16.55 |
| Energy contribution | -16.79 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.97 |
| SVM RNA-class probability | 0.892667 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1839111 95 - 22224390 AGUAGCCAAGAACGUUGGCUGGCGAAAGGUAAGUCUCUGGAUGCAGAGAAACAAAACAGGCCCAGUGUCGCAACAGGGGAAAAU-GCCAGUU---CGGC--- ..(((((((.....))))))).((((.((((..((((((....))))))...........(((.((......)).))).....)-)))..))---))..--- ( -28.10) >DroSec_CAF1 40039 96 - 1 AGCAGCCAAGAACGUC-GCUGGCGAAAGGCAAGUCUCUGGAUGCAGAGAAACAAAAU-GGUCUAGUGUCGCAGCAGGGGAAACU-CCCAGUG---CGGCUAA ...((((.....((.(-((((((....).....((((((....))))))........-...)))))).))..(((.(((.....-)))..))---))))).. ( -33.10) >DroSim_CAF1 39067 72 - 1 AGCAGCCAAGAACGUC-GCUGGCGAAAGGCAAGUCUCUGGAUGCAGAGAAACAAAAU-GGUCUAGUGUCGCAGC---------------------------- ..((((..........-))))((((.((((...((((((....))))))........-.))))....))))...---------------------------- ( -18.60) >DroEre_CAF1 42770 93 - 1 UGCAGCCCGGAACGGCGGCUGGCGAAAGGCAGGUCUCUGGAUGCAGAGAGACAAAAU-GGUCUGGUGCCGGAU--------ACUUUCCAGCCAGCUGGCAAG (((.(((......)))(((((((....((((..((((((....))))))(((.....-.)))...))))(((.--------....))).))))))).))).. ( -40.40) >consensus AGCAGCCAAGAACGUC_GCUGGCGAAAGGCAAGUCUCUGGAUGCAGAGAAACAAAAU_GGUCUAGUGUCGCAGC_______ACU__CCAGU____CGGC___ .((((((.........))))((((..((((...((((((....))))))..........))))..))))))............................... (-16.55 = -16.79 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:26 2006