Locus 656

Sequence ID X_DroMel_CAF1
Location 1,838,961 – 1,839,054
Length 93
Max. P 0.641700
window1056

overview

Window 6

Location 1,838,961 – 1,839,054
Length 93
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 72.47
Mean single sequence MFE -29.26
Consensus MFE -10.45
Energy contribution -14.70
Covariance contribution 4.25
Combinations/Pair 1.08
Mean z-score -1.76
Structure conservation index 0.36
SVM decision value 0.22
SVM RNA-class probability 0.641700
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1838961 93 - 22224390
UCGCAGUGUACCGAUCGUGGCUGCAAUUAUGGCUCUUUGGGCUUGGUUGUACG--CUUGCAACUA-----UGCAAC--------UAUGGCCUAGACCUAGCCAACUGC-
..(((((((((((....))).))).....(((((.((((((((((((((((..--..........-----))))))--------)).))))))))...))))))))))- ( -32.20)
>DroSec_CAF1 39871 100 - 1
UCCCGGUGUAC-GAUCGUGGCUGCAAUUAUGGCUCUUUGGGCUUGGUUGUACG--CUUGCAACUA-----AGCAACUAUUUCACUAUGGCCUAGACCUAGCCAACUGC-
.((((((....-.)))).))..(((....(((((.((((((((((((((((..--..))))))))-----)))..((((......)))).)))))...)))))..)))- ( -28.60)
>DroSim_CAF1 38915 92 - 1
UCCCGGUGUAC-GAUCGUGGCUGCAAUUAUGGCUCUUUGGGCUUGGUUGUACG--CUUGCAACUA-----UGCAAC--------UGUGGCCUAGACCUAGCCAACUGC-
.((((((....-.)))).))..(((....(((((.((((((((((((((((..--..))))))))-----.((...--------.))))))))))...)))))..)))- ( -26.40)
>DroEre_CAF1 42644 84 - 1
UUGCGGUGUAC-GAUCGCGGCCGCAAUUAUGGCUCUUUGGGCUUGGUU----------GCAACUA-----UGCAAC--------UAUGGCCUAGACCUAGCCAACUGC-
(((((((((..-....)).)))))))...(((((.(((((((((((((----------(((....-----))))))--------)).))))))))...))))).....- ( -36.20)
>DroAna_CAF1 49144 85 - 1
UUGAAG--------UCUGGGGUGCAAUUAUGGG--------CAUUGCAUUACUAUCUCGUAUCUCGUAGUAGUAAC--------UAUAACCUAGACCUAGCCAAACGCC
.....(--------(((((((((((((......--------.)))))))((((((..((.....))..))))))..--------.....)))))))............. ( -22.90)
>consensus
UCGCGGUGUAC_GAUCGUGGCUGCAAUUAUGGCUCUUUGGGCUUGGUUGUACG__CUUGCAACUA_____UGCAAC________UAUGGCCUAGACCUAGCCAACUGC_
..(((((............))))).....(((((.((((((((((((((((......))))))))......................))))))))...)))))...... (-10.45 = -14.70 +   4.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:25 2006