Locus 655

Sequence ID X_DroMel_CAF1
Location 1,835,127 – 1,835,231
Length 104
Max. P 0.907089
window1055

overview

Window 5

Location 1,835,127 – 1,835,231
Length 104
Sequences 4
Columns 107
Reading direction forward
Mean pairwise identity 81.95
Mean single sequence MFE -26.75
Consensus MFE -18.09
Energy contribution -18.78
Covariance contribution 0.69
Combinations/Pair 1.14
Mean z-score -2.16
Structure conservation index 0.68
SVM decision value 1.05
SVM RNA-class probability 0.907089
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1835127 104 + 22224390
UUGGUGCAGCGAUGCAAUGUGCAAUGUGCAUUUGCUUGUGCUUGUGCUUGUGCUUUUGCUUUGCCAACU---GCAGUUGGCAUUGUUAGUUUUCAUUUUCACAUUAU
..((..(((((..((((.((((.....))))))))...))).))..))((.(((...((..(((((((.---...)))))))..)).)))...))............ ( -31.90)
>DroPse_CAF1 67277 90 + 1
UUGGUGCAACGUUGCAACGUUCGGUGU-----UG------CUGCUGUUGCUGU------UGUUGCAAUUACAACAGUUGGCAUUGUUAGUUUUCAUUUUCACAUUAU
..((((((((((.((((((.....)))-----))------).)).)))(((((------(((.......))))))))..)))))....................... ( -22.10)
>DroSec_CAF1 36211 98 + 1
UUGGUGCAGCGAUGCAAUGUGCAAUGUGCAUUUGCUUGUGCUUGUGCUUGUGC------UUUGGCAACU---GCAGUUGGCAUUGUUAGUUUUCAUUUUCACAUUAU
.(((.((((((((((...(..(((.(..((...((....)).))..))))..)------.....((((.---...)))))))))))).))..)))............ ( -26.50)
>DroSim_CAF1 35644 98 + 1
UUGGUGCAGCGAUGCAAUGUGCAAUGUGCAUUUGCUUGUGCUUGUGCUUGUGC------UUUGGCAACU---GCAGUUGGCAUUGUUAGUUUUCAUUUUCACAUUAU
.(((.((((((((((...(..(((.(..((...((....)).))..))))..)------.....((((.---...)))))))))))).))..)))............ ( -26.50)
>consensus
UUGGUGCAGCGAUGCAAUGUGCAAUGUGCAUUUGCUUGUGCUUGUGCUUGUGC______UUUGGCAACU___GCAGUUGGCAUUGUUAGUUUUCAUUUUCACAUUAU
.(((.((((((((((...((((((.(((((......))))))))))).................(((((.....))))))))))))).))..)))............ (-18.09 = -18.78 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:24 2006