Locus 654

Sequence ID X_DroMel_CAF1
Location 1,832,791 – 1,832,896
Length 105
Max. P 0.686025
window1054

overview

Window 4

Location 1,832,791 – 1,832,896
Length 105
Sequences 4
Columns 107
Reading direction forward
Mean pairwise identity 89.15
Mean single sequence MFE -18.38
Consensus MFE -13.11
Energy contribution -12.93
Covariance contribution -0.19
Combinations/Pair 1.21
Mean z-score -1.92
Structure conservation index 0.71
SVM decision value 0.32
SVM RNA-class probability 0.686025
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1832791 105 + 22224390
ACCUUUUCCUUGCAGUGC--GAGUAAUUGUUAUUCGAUAUUUCGGCAAUUGCUUAGUUUCUUUCAUAUCCUAUCGAUUUGAAUACCCACCAUCUUAGUUUUCUUUUC
..............(((.--((((((((((....(((....))))))))))))).......((((.(((.....))).))))....))).................. ( -15.50)
>DroSec_CAF1 33344 105 + 1
ACUUUUUCCUUGCAGUGC--GAGUAAUUGUUAUUCGAUAUUUCGGCAAUUGCUUAGUUUCUUUUAUAUUCUAUCGAUUUGAAUAUGCACCAUCUUAAUUUUAUUUUC
..............((((--((((((((((....(((....)))))))))))))..........((((((.........)))))))))).................. ( -19.70)
>DroSim_CAF1 32518 105 + 1
ACUUUUUCCUUGCAGUGC--GAGUAAUUGUUAUUCGAUAUUUCGGCAAUUGCUUAGUUUCUUUUAUAUUCUAUCGAUUUGAAUAUGCACCAUCUUAAUUUUAUUUUC
..............((((--((((((((((....(((....)))))))))))))..........((((((.........)))))))))).................. ( -19.70)
>DroEre_CAF1 32938 107 + 1
ACCUUUUCCAUGCAGUGCGCGGGUAAUUGCUAUUCGAUAUUUUGGCAAUCGCCUAGUUUCACUCAUAUUCUAUCGAUUUGAACAUCCACCAUCUUAUUUUUCAUUCG
.........(((.((((.(((((..(((((((..........)))))))..))).))..))))))).......(((..((((.................)))).))) ( -18.63)
>consensus
ACCUUUUCCUUGCAGUGC__GAGUAAUUGUUAUUCGAUAUUUCGGCAAUUGCUUAGUUUCUUUCAUAUUCUAUCGAUUUGAAUAUCCACCAUCUUAAUUUUAUUUUC
..............((((..((((((((((....(((....))))))))))))).......((((.(((.....))).))))...)))).................. (-13.11 = -12.93 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:23 2006