Locus 653

Sequence ID X_DroMel_CAF1
Location 1,831,895 – 1,832,006
Length 111
Max. P 0.666800
window1053

overview

Window 3

Location 1,831,895 – 1,832,006
Length 111
Sequences 4
Columns 116
Reading direction reverse
Mean pairwise identity 92.22
Mean single sequence MFE -28.11
Consensus MFE -21.98
Energy contribution -21.85
Covariance contribution -0.13
Combinations/Pair 1.09
Mean z-score -1.84
Structure conservation index 0.78
SVM decision value 0.28
SVM RNA-class probability 0.666800
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1831895 111 - 22224390
UCAAUUCUCAUCCAUGCCUCCCCACUUGCAUUUUCUAUUGAUGCGCCUUUUCGGGCCUUUCCUCGCUUUUCAGGCACACGGACAGUCCCUGGGUUUC-----CCAUGUGUGGAAAU
....(((.((..((((....((((...(((((.......)))))........(((.((.(((..(((.....)))....))).)).)))))))....-----.))))..))))).. ( -28.40)
>DroSec_CAF1 32465 111 - 1
UCAAUUCUCAUCCAUGCCUCGCCACUUGCAUUUUCUAUUGAUGCGCCUUUUCUGGUCGUUCCUCGCUUUUCAGGCGCACGGACAGUCCCUGGGUUUC-----CCAUGUGUGGAAAU
..........(((((((..........(((((.......)))))((((...(((..(((....((((.....)))).)))..))).....))))...-----....)))))))... ( -27.10)
>DroSim_CAF1 31612 111 - 1
UCAAUUCUCAUCCAUGCCUCCCCACUUGCAUUUUCUAUUGAUGCGCCUUUUCUGGCCGUUCCUCGCUUUUCAGGCACACGGACAGUCCCUAGGUUUC-----CCAUGUGUGGAAAU
..........(((((((..........(((((.......)))))((((...(((.((((.(((........)))...)))).))).....))))...-----....)))))))... ( -26.10)
>DroEre_CAF1 32058 116 - 1
CCAUUUCUCAUCCAUGCCUCCCCACUUGCAUUUUCUAUUGAUGCGCCUUUUCGGGCUUUUCCUCGCUUUUCAGGCACACAGGCAGUGCCUGGGUUUCCAGUUCCAUGUGUGGAAAU
...............((((.......((((((.......)))))).......)))).(((((.(((....(((((((.......)))))))((.........))..))).))))). ( -30.84)
>consensus
UCAAUUCUCAUCCAUGCCUCCCCACUUGCAUUUUCUAUUGAUGCGCCUUUUCGGGCCGUUCCUCGCUUUUCAGGCACACGGACAGUCCCUGGGUUUC_____CCAUGUGUGGAAAU
..........(((((((..........(((((.......)))))(((......)))............((((((.((.......)).)))))).............)))))))... (-21.98 = -21.85 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:22 2006