Locus 652

Sequence ID X_DroMel_CAF1
Location 1,825,341 – 1,825,441
Length 100
Max. P 0.970675
window1052

overview

Window 2

Location 1,825,341 – 1,825,441
Length 100
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 76.41
Mean single sequence MFE -32.63
Consensus MFE -22.92
Energy contribution -23.00
Covariance contribution 0.08
Combinations/Pair 1.21
Mean z-score -2.01
Structure conservation index 0.70
SVM decision value 1.66
SVM RNA-class probability 0.970675
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1825341 100 + 22224390
CUUACAUACGUAUGUACAUAUAGUGGACAGCCGUUGGUGACAUUGCGAUGGCCCGUGGUGUGUGUGCACAUUUGUGUGUGCUCGCUUGUAAUCAGCGACU
..((((((((..((((((((((.(((...(((((((.........))))))))))...))))))))))....)))))))).(((((.......))))).. ( -31.70)
>DroSec_CAF1 26026 100 + 1
CUUACAUACAUAUGUACAUAUAGCGGACAGCCGUUGGUGACAUUGCGAUGGCCCGUGGUGUGUGUGCACAUUUGUGUGUGCUCGCUUGUAAUCAGCGACU
..((((((((..((((((((((((((...(((((((.........)))))))))))..))))))))))....)))))))).(((((.......))))).. ( -36.20)
>DroSim_CAF1 27835 100 + 1
CUUACAUACAUAUGUACAUAUAGCGGACAGCCGUUGGUGACAUUGCGAUGGCCCGUGGUGUGUGUGCACAUUUGUGUGUGCUCGCUUGUAAUCAGCGACU
..((((((((..((((((((((((((...(((((((.........)))))))))))..))))))))))....)))))))).(((((.......))))).. ( -36.20)
>DroEre_CAF1 25603 75 + 1
-----------------------CGGACAGCCGCUGGUGCCACUGCGUUGGCCUGCGGUG--UGCGCACAUUUGUGUGUGCUUGCUUGUAAUCAGCGACU
-----------------------.....((.((((((((((((((((......)))))))--.))((((((....)))))).........))))))).)) ( -30.30)
>DroYak_CAF1 27491 75 + 1
-----------------------UAGCUCGCCAUUGGCGACACUGCGUUGGCCUGCGGUG--UGCGCACAUUUGUGUGUGCUUGCCUGUAAUCAGCGACU
-----------------------..(((.......((((((((((((......)))))))--)(((((((....))))))).)))).......))).... ( -28.74)
>consensus
CUUACAUAC_UAUGUACAUAUAGCGGACAGCCGUUGGUGACAUUGCGAUGGCCCGUGGUGUGUGUGCACAUUUGUGUGUGCUCGCUUGUAAUCAGCGACU
...............................(((((((.((((((((......))))))))(((.((((((....)))))).))).....)))))))... (-22.92 = -23.00 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:20 2006