Locus 65

Sequence ID X_DroMel_CAF1
Location 301,168 – 301,259
Length 91
Max. P 0.722690
window79

overview

Window 9

Location 301,168 – 301,259
Length 91
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 86.62
Mean single sequence MFE -17.22
Consensus MFE -15.11
Energy contribution -14.87
Covariance contribution -0.25
Combinations/Pair 1.13
Mean z-score -1.62
Structure conservation index 0.88
SVM decision value 0.40
SVM RNA-class probability 0.722690
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 301168 91 - 22224390
---CCCA-------CUUAAAA-CUU--------UUCUCCCCUGCCACACAAUUCAAAAUGUUCGUGCUUAAGCGCUAUUAAGUGGCAAAAAUCGCACGCGCAUCAAGCAU
---....-------.......-...--------........(((((((((........)))..((((....))))......))))))..........((.......)).. ( -16.30)
>DroSec_CAF1 44228 91 - 1
---CCCA-------CUCAAAA-CUU--------CUCUCCCCUGCCACACAAUUCAAAAUGUUCGUGCUUAAGCGCUAUUAAGUGGCAAAAAUCGCACGCGCAUCAAGCAU
---....-------.......-...--------........(((((((((........)))..((((....))))......))))))..........((.......)).. ( -16.30)
>DroSim_CAF1 64855 91 - 1
---CCCA-------CUCAAAA-CUU--------CUCUCCCCUGCCACACAAUUCAAAAUGUUCGUGCUUAAGCGCUAUUAAGUGGCAAAAAUCGCACGCGCAUCAAGCAU
---....-------.......-...--------........(((((((((........)))..((((....))))......))))))..........((.......)).. ( -16.30)
>DroEre_CAF1 43238 94 - 1
AUCCCCA-------CUCAAAA-UUC--------CUCUCCCCUGCCACACAAUUCAAAAUGUUCGUGCUUAAGCGCUAUUAAGUGGCAAAAAUCGCACGCGCAUCAAGCAU
.......-------.......-...--------........(((((((((........)))..((((....))))......))))))..........((.......)).. ( -16.30)
>DroYak_CAF1 65111 102 - 1
AUCCCCA-------CUCAAAA-CUCCCUGCCGCCUCUCCCCUGCCACACAAUUCAAAAUGUUCGUGCUUAAGCGCUAUUAAGUGGCAAAAAUCGCACGCGCAUCAAGCGU
.......-------.......-.........((........(((((((((........)))..((((....))))......))))))......))((((.......)))) ( -19.14)
>DroAna_CAF1 57821 99 - 1
---CCCAAGGAGCCCCCAAGAUCCC--------CUCGUCCUGGCCACACAAUUCAAAAUGUUCGUGUUUAAGCGCUAUUAAGUGGCAAAAAUCGCGCUCACAUCAAGACU
---......((((...((.(((...--------...))).))((((((((........)))..((((....))))......))))).........))))........... ( -19.00)
>consensus
___CCCA_______CUCAAAA_CUC________CUCUCCCCUGCCACACAAUUCAAAAUGUUCGUGCUUAAGCGCUAUUAAGUGGCAAAAAUCGCACGCGCAUCAAGCAU
.........................................(((((((((........)))..((((....))))......))))))..........((.......)).. (-15.11 = -14.87 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:47 2006