Locus 649

Sequence ID X_DroMel_CAF1
Location 1,821,946 – 1,822,058
Length 112
Max. P 0.697518
window1047

overview

Window 7

Location 1,821,946 – 1,822,058
Length 112
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.44
Mean single sequence MFE -21.32
Consensus MFE -11.97
Energy contribution -12.30
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.10
Structure conservation index 0.56
SVM decision value 0.34
SVM RNA-class probability 0.697518
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1821946 112 + 22224390
CAUUGCUAAUUGCGUUUAAUAUUUAUAAUUGACCUAAAUACAUUUUUGCGAUUGGCAUUGCCAAAAA-A----AAAACGUAAAAACAAAAGAAAGCAGCGGAGCACGCAAAG--GGCA-A
...(((((((((((.....((((((.........))))))......)))))))))))(((((.....-.----.....((....))...........(((.....)))....--))))-) ( -24.20)
>DroPse_CAF1 49113 110 + 1
CAUUGCUAAUUGCGUUUAAUAUUUAUAAUUGACCCAAAUAAAU-UCUGCGAUUGGCUUUGCCAAAAC------AAAACCAAACAAACAAAGAAAGCAGAAUCAGAGGCAGAA--GCAG-A
..(((((..((((.(((..........(((......)))..((-(((((..((((.((((......)------))).)))).(.......)...))))))).))).)))).)--))))-. ( -20.10)
>DroEre_CAF1 22048 117 + 1
CAUUGCUAAUUGCGUUUAAUAUUUAUAAUUGACCUAAAUACACUUUUGCGAUUGGCAAUGCCAAAAAAAAAACAAAACGUAAAAACAAAAGAAAGCAGGGGAGCACGCAAAG--GGCA-A
..(((((..((((((....((((((.........))))))..(((((((..(((((...)))))..............((....))........)))))))...))))))..--))))-) ( -24.40)
>DroYak_CAF1 23930 109 + 1
CAUUGCUAAUUGCGUUUAAUAUUUAUAAUUGACCCAAAUACAUUUUUGCGAUUGGCAUUGCCAAAAA--------GGCGUAAAAACAAAAGAAAGCAGCGGAGCACGCAAAG--GGCA-A
..(((((..((((((...........................((((((((.(((((...)))))...--------..)))))))).........((......))))))))..--))))-) ( -24.50)
>DroAna_CAF1 27398 118 + 1
CAUUGCUAAUUGCGCUUAAUAUUUAUAAUUGACCUAAAUACAUUUUUGCGAUUGGCAUUGCCAAAACGG--ACAAUACAAAAAAAAAAAAUAACACAAAAAACGAGGCAAAAACAACAAA
...(((((((((((.....((((((.........))))))......)))))))))))(((((....((.--...............................)).))))).......... ( -17.35)
>DroPer_CAF1 47083 110 + 1
CAUUGCUAAUUGCGUUUAAUAUUUAUAAUUGACCCAAAUAAAU-UCUGCGAUUGGCUUUGCCAAAAC------AAAACCAAACAAACAAAGAAAGCAGAAUCAGAAUCAGAG--GCAG-A
..(((((..(((.(.(((((.......))))).))))....((-(((((..((((.((((......)------))).)))).(.......)...)))))))..........)--))))-. ( -17.40)
>consensus
CAUUGCUAAUUGCGUUUAAUAUUUAUAAUUGACCCAAAUACAUUUUUGCGAUUGGCAUUGCCAAAAA______AAAACGAAAAAAAAAAAGAAAGCAGAAGAGCACGCAAAG__GGCA_A
((.(((((((((((.....(((((...........)))))......))))))))))).))............................................................ (-11.97 = -12.30 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:16 2006