Locus 642

Sequence ID X_DroMel_CAF1
Location 1,801,035 – 1,801,140
Length 105
Max. P 0.633304
window1033

overview

Window 3

Location 1,801,035 – 1,801,140
Length 105
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 83.37
Mean single sequence MFE -32.02
Consensus MFE -23.14
Energy contribution -25.34
Covariance contribution 2.20
Combinations/Pair 1.07
Mean z-score -1.69
Structure conservation index 0.72
SVM decision value 0.21
SVM RNA-class probability 0.633304
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1801035 105 - 22224390
CCAUUUAAGAUGGCUUUCGGCAUUUGACAGCUGUCAGAAUUCGGGAUGCGGGAUUGAAAGCCAUUGGUUUUCGGUUUCCCGGAUUCCUGCCUGCAUGGGCAUUUC
........(((((((.(((.....))).))))))).((((((((((.....(((((((((((...))))))))))))))))))))).(((((....))))).... ( -39.80)
>DroSec_CAF1 9585 94 - 1
CUAU-----------UUCGGCAUUUGACAGCUGUCAGAAUUCGGGAUGCGGGAUUGAAAGCCAUUGGUUUUCGGUUUUCCGGAUUCCUGCCUGCAUGGGGAUUUC
((((-----------...((((((((((....))))))....(((((.((((((((((((((...)))))))))))..))).)))))))))...))))....... ( -34.20)
>DroSim_CAF1 9605 105 - 1
CCAUUUAAGAUGGCUUUCGGCAUUUGACAGCUGUCAGAAUUCGGGAUGCGGGAUUGAAAGCCAUUGGUUUUCGGUUUUCCGGAUUCCUGCCUGCAUGGGGAUUUC
((((....((......))((((((((((....))))))....(((((.((((((((((((((...)))))))))))..))).)))))))))...))))....... ( -36.00)
>DroEre_CAF1 9658 91 - 1
-------AGAUAAUUUUCGGCAGUUGACAGCUGUCAGAAUUCGGGAUGGAGGAUUGAAAGCCAUUGGGU-------UUCCGGAUUCCUGCCUGCAUGGGCAUUUC
-------...........((((((.....)))))).((((((((((.............(((....)))-------)))))))))).(((((....))))).... ( -26.01)
>DroYak_CAF1 9869 95 - 1
-------AGAUGCUUUUCGGCAUUUGACAGCUGCCAGAAUUCGGGAUACAGGAUUGAAAGCCAUUGGAUU---GCUUUCUGGAUUCCAGCCUGCAUGGGCAUUUC
-------(((((((....)))))))......((((...((.((((.....(((..((((((.........---)))))).....)))..)))).)).)))).... ( -24.10)
>consensus
C_AU___AGAUGGCUUUCGGCAUUUGACAGCUGUCAGAAUUCGGGAUGCGGGAUUGAAAGCCAUUGGUUUUCGGUUUUCCGGAUUCCUGCCUGCAUGGGCAUUUC
..................(((.((((((....))))))....(((((.(((((.((((((((...))))))))...))))).))))).))).............. (-23.14 = -25.34 +   2.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:04 2006