Locus 641

Sequence ID X_DroMel_CAF1
Location 1,797,513 – 1,797,633
Length 120
Max. P 0.989471
window1032

overview

Window 2

Location 1,797,513 – 1,797,633
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 95.00
Mean single sequence MFE -38.42
Consensus MFE -38.04
Energy contribution -36.98
Covariance contribution -1.06
Combinations/Pair 1.16
Mean z-score -2.39
Structure conservation index 0.99
SVM decision value 2.17
SVM RNA-class probability 0.989471
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1797513 120 - 22224390
AAAACAUUAUCCUGCUGCCCGAGGUAAGAACUUUAUUUUAGCAUUUGUCUUGUCGCAAUCACAGUGCUAGCAGCCGAUCGUGUUGGCAUUGAUGAACUGCACGAACAAGUGCGGCACCUG
...............((((.(((((....)))))......((((((((.((((.(((.((((((((((((((........))))))))))).)))..))))))))))))))))))).... ( -39.10)
>DroSec_CAF1 6017 120 - 1
AAAACAUUAUCCUGCUGCCCGAGGUAAGAACUUCGUUUUAGCAUUUGUCUUGCCGCAAUCACAGUGCUAGCAGCCGAUCGUGUUGGCAUUGAUGAACUGCACAAAUAAAUGCGGCACCUG
...............((((((((((....)))))).....((((((((.(((..(((.((((((((((((((........))))))))))).)))..))).))))))))))))))).... ( -39.20)
>DroSim_CAF1 6014 120 - 1
AAAACAUUAUCCUGCUGCCCGAGGUAAGAACUUCAUUUUAGCAUUCGUCUUGCCGCAAUCACAGUGCUAGCAGCCGAUCGUGUUGGCAUUGAUGAACUGCACAAAUAAAUGCGGCACCUG
............((((((....(((((((..................)))))))(((.((((((((((((((........))))))))))).)))..)))..........)))))).... ( -35.17)
>DroYak_CAF1 6160 120 - 1
AAAACAUUAUCCUGCUGCCCGAAGUAAGAACUUCACUUCAGCAUUUGUCUUGCCGCAAUCACAGUGCUAGCAGCCGAUCGUGUUGGCAUUGAUGAACUGCACGAACAGGUGCGGCACCUG
............(((((...(((((....)))))....))))).......(((((((.((((((((((((((........))))))))))).))).(((......))).))))))).... ( -40.20)
>consensus
AAAACAUUAUCCUGCUGCCCGAGGUAAGAACUUCAUUUUAGCAUUUGUCUUGCCGCAAUCACAGUGCUAGCAGCCGAUCGUGUUGGCAUUGAUGAACUGCACAAACAAAUGCGGCACCUG
...............((((.(((((....)))))......((((((((.(((..(((.((((((((((((((........))))))))))).)))..))).))))))))))))))).... (-38.04 = -36.98 +  -1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:03 2006