Locus 64

Sequence ID X_DroMel_CAF1
Location 299,052 – 299,142
Length 90
Max. P 0.956909
window78

overview

Window 8

Location 299,052 – 299,142
Length 90
Sequences 3
Columns 90
Reading direction forward
Mean pairwise identity 79.84
Mean single sequence MFE -17.90
Consensus MFE -11.50
Energy contribution -12.83
Covariance contribution 1.34
Combinations/Pair 1.11
Mean z-score -2.45
Structure conservation index 0.64
SVM decision value 1.47
SVM RNA-class probability 0.956909
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 299052 90 + 22224390
AUUAAAAACGUGUUUGAGAAUGCUCUUAGGAGUACGCAAAUGUACGUAGUAUACAUAUAUGUACAUCAAACCAUUUUAUAUCAGCUAACU
....((((.(.(((((((..(((((....)))))..)...((((((((.........))))))))))))))).))))............. ( -18.70)
>DroSec_CAF1 42133 78 + 1
AGUAAAA---------AGAAUGGACUUAGGAGUACACAGAUGUACAUAGUU---GUAUAUUUACAUCAAACCAUUCUAUAUCAGCGAACU
.......---------((((((((((....))).....((((((.(((...---...))).))))))...)))))))............. ( -16.60)
>DroSim_CAF1 62761 76 + 1
AGUAAAA---------AGAAUGGUCUUAGGAGUACACAGAUGUACACAGUU---GUAU--GUACAUCAAACCAUUCUAUAUCAGCGAACU
.......---------((((((((....(.....)...((((((((.....---...)--)))))))..))))))))............. ( -18.40)
>consensus
AGUAAAA_________AGAAUGGUCUUAGGAGUACACAGAUGUACAUAGUU___GUAUAUGUACAUCAAACCAUUCUAUAUCAGCGAACU
................(((((((.....(.....)...((((((((((.........))))))))))...)))))))............. (-11.50 = -12.83 +   1.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:46 2006