Locus 639

Sequence ID X_DroMel_CAF1
Location 1,794,361 – 1,794,461
Length 100
Max. P 0.775569
window1029

overview

Window 9

Location 1,794,361 – 1,794,461
Length 100
Sequences 3
Columns 100
Reading direction forward
Mean pairwise identity 96.66
Mean single sequence MFE -14.33
Consensus MFE -13.81
Energy contribution -13.93
Covariance contribution 0.11
Combinations/Pair 1.04
Mean z-score -1.79
Structure conservation index 0.96
SVM decision value 0.54
SVM RNA-class probability 0.775569
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1794361 100 + 22224390
AUUAAUUAGGGAUAUGUCUGUAAAACAAUAUGUAUAUCAGUCACUAUCUCAACUUCUGAUUCAUAUGUUAACUUUAAACACCUCCUUUAAAAAAAAGACU
.......(((((..(((...((((..(((((((..(((((...............)))))..)))))))...)))).)))..)))))............. ( -13.86)
>DroSec_CAF1 2848 99 + 1
AUUAAUAAGGGAUAUGUCUAUAAAACAAUAUGUAUAUCAGUCACUAUCUCAACUUCUGAUUCAUAUGUUAACUUUAAACACCUCCUUUUAA-AAAAGACU
......((((((..(((.((......(((((((..(((((...............)))))..))))))).....)).)))..))))))...-........ ( -14.16)
>DroSim_CAF1 2875 99 + 1
AUUAAUAAGGGAUAUGUCUAUAAAACAAUAUGUAUAUCAGUCACUAUCUCAACUUCUGAUUCAUAUGUUAACUUUAAACACUUCCUUUUAA-AAAAGACU
......((((((..(((.((......(((((((..(((((...............)))))..))))))).....)).)))..))))))...-........ ( -14.96)
>consensus
AUUAAUAAGGGAUAUGUCUAUAAAACAAUAUGUAUAUCAGUCACUAUCUCAACUUCUGAUUCAUAUGUUAACUUUAAACACCUCCUUUUAA_AAAAGACU
......((((((..(((.((......(((((((..(((((...............)))))..))))))).....)).)))..))))))............ (-13.81 = -13.93 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:00 2006