Locus 638

Sequence ID X_DroMel_CAF1
Location 1,785,056 – 1,785,151
Length 95
Max. P 0.636572
window1028

overview

Window 8

Location 1,785,056 – 1,785,151
Length 95
Sequences 4
Columns 103
Reading direction reverse
Mean pairwise identity 90.40
Mean single sequence MFE -20.55
Consensus MFE -15.59
Energy contribution -15.03
Covariance contribution -0.56
Combinations/Pair 1.15
Mean z-score -1.71
Structure conservation index 0.76
SVM decision value 0.21
SVM RNA-class probability 0.636572
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1785056 95 - 22224390
AGUUGAAUUAGAGCGGGUGCGAGAUGCAUGGUUUGGGUGUCGUGCACAGAUAUGGAAAAGAAACAAUACCGAAU--------AGUUCCAAUCAAUAAUUAAAA
....((((((...((((..(((.((.((.....)).)).)))..).((....))..............)))..)--------)))))................ ( -20.70)
>DroSec_CAF1 1063 95 - 1
AGUUGAAUUAGAGCGGGUGCGAGAUGCAUGGUUUGGGUGUCGUGCACAGAUAUGGAAAAGAAACAAUACCGAAU--------AGUUCCAAUCAAUAAUUAAAA
....((((((...((((..(((.((.((.....)).)).)))..).((....))..............)))..)--------)))))................ ( -20.70)
>DroSim_CAF1 1085 95 - 1
AGUUGAAUUAGAGCGGGUGCGAGAUGCAUGGUUUGGGUGUCGUGCACAGAUAUGGAAAAGAAACAAUACCGAAU--------AGUUCCAAUCAAUAAUUAAAA
....((((((...((((..(((.((.((.....)).)).)))..).((....))..............)))..)--------)))))................ ( -20.70)
>DroYak_CAF1 1125 103 - 1
AGUUGAAUUAGAGCGGGUGCGAGAUACAAGGUGUGGGUGUCGUGUACAGAUAUGGAAAAGAAACAUAAGCGAAAGAAAUUGGAUUUCCAAUCAGUAAUAAAAA
.......(((..((..(((((.(((((.........))))).))))).(((.((((((.....((....(....)....))..))))))))).))..)))... ( -20.10)
>consensus
AGUUGAAUUAGAGCGGGUGCGAGAUGCAUGGUUUGGGUGUCGUGCACAGAUAUGGAAAAGAAACAAUACCGAAU________AGUUCCAAUCAAUAAUUAAAA
.(((((..........(((((.(((((.........))))).))))).....(((((...........................))))).)))))........ (-15.59 = -15.03 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:59 2006