Locus 637

Sequence ID X_DroMel_CAF1
Location 1,784,033 – 1,784,125
Length 92
Max. P 0.573412
window1027

overview

Window 7

Location 1,784,033 – 1,784,125
Length 92
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 78.37
Mean single sequence MFE -21.77
Consensus MFE -11.56
Energy contribution -13.67
Covariance contribution 2.11
Combinations/Pair 1.05
Mean z-score -1.81
Structure conservation index 0.53
SVM decision value 0.08
SVM RNA-class probability 0.573412
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1784033 92 - 22224390
CCGUUUGGAGCAUGUGCUCCAGAACACAG-CGCAAAAACAAUAACAAUUACCCAUAGUAAAGGAAGGCGUUCUGCACCUUCUGAAUGUGCUUC
...((((((((....))))))))....((-((((.............((((.....)))).((((((.(.....).))))))...)))))).. ( -28.00)
>DroPse_CAF1 9601 77 - 1
CCAUUUCA-----------CUG---ACAGCCAUAAAGGCA--AACACUCACCCAUAGUACAGAAAGGCAUUCUGGACCUUCUGAAUGUGCUGC
........-----------...---...(((.....))).--............(((((((..(((((......).)))).....))))))). ( -13.60)
>DroSec_CAF1 84 92 - 1
CCGUUUGGAGCAUGUGCUCCAGAACGCAG-UUCAAAAACAAUAACAAUUACCCAUAGUAAAGGAAGGCGUUCUGCACCUUCUGAAUGUGCCUC
...((((((((....))))))))..((((-(((..............((((.....)))).((((((.(.....).)))))))))).)))... ( -25.80)
>DroSim_CAF1 84 92 - 1
CCGUUUGGAGCAUGUGCUCCAGAACGCAG-UUCAAAAACAAUAACAAUUACCCAUAGUAAAGGAAGGCGUUCUGCACCUUCUGAAUGUGCCUC
...((((((((....))))))))..((((-(((..............((((.....)))).((((((.(.....).)))))))))).)))... ( -25.80)
>DroEre_CAF1 93 92 - 1
CCGUUUGGAGCAUGUGCUCCAGAAUGCAG-CACAAAAACAAUAACAAUUACCCAUAGUAAAGGAAGGCGUUCUGCACCUUCUGAAUAUGCUUC
...((((((((....))))))))....((-((...............((((.....)))).((((((.(.....).)))))).....)))).. ( -23.80)
>DroPer_CAF1 8663 77 - 1
CCAUUUCA-----------CUG---ACAGCCAUAAAGGCA--AAAACUCACCCAUAGUACAGAAAGGCAUUCUGGACCUUCUGAAUGUGCUGC
........-----------...---...(((.....))).--............(((((((..(((((......).)))).....))))))). ( -13.60)
>consensus
CCGUUUGGAGCAUGUGCUCCAGAACACAG_CACAAAAACAAUAACAAUUACCCAUAGUAAAGGAAGGCGUUCUGCACCUUCUGAAUGUGCUUC
...((((((((....)))))))).............................((((.....((((((.(.....).))))))...)))).... (-11.56 = -13.67 +   2.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:58 2006