Locus 634

Sequence ID X_DroMel_CAF1
Location 1,764,613 – 1,764,727
Length 114
Max. P 0.605342
window1022

overview

Window 2

Location 1,764,613 – 1,764,727
Length 114
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 80.15
Mean single sequence MFE -35.30
Consensus MFE -23.02
Energy contribution -24.34
Covariance contribution 1.32
Combinations/Pair 1.23
Mean z-score -1.67
Structure conservation index 0.65
SVM decision value 0.15
SVM RNA-class probability 0.605342
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1764613 114 - 22224390
GGCACACGGGCCGUGAUGCAGUUACUCCGCGAGGUUAUAGUCGACCCUCUUUCUGAGUUUUUUUUACGCGGAGAAUGAUUCAAAACCGAAACA-----CAUCGCUGCCCAUCGCCAGAA
(((....((((.((((((......(((((((.((((......))))(((.....))).........)))))))..((.(((......))).))-----)))))).))))...))).... ( -40.90)
>DroSec_CAF1 6094 113 - 1
GGCACACGGGCCGUGAUGCAGUGACUCCGCGAGGUAAUAAUCGACCACCUUUCUGAGUUAU-CCCACGCGGAGAAUCAUUCAAAACCGAAACA-----CAUCGCUGCCCACCGCCAGAA
(((....((((.((((((......(((((((.((......(((..........))).....-.)).))))))).....(((......)))...-----)))))).))))...))).... ( -37.10)
>DroSim_CAF1 6113 113 - 1
GGCACACGGGCCGUGAUGCAGUGACUCCGCGAGGUAAUAAUCGACCGCCUUUCUGAGUUAU-CCCACGCGGAGAAUGAUUCAAAACCGAAACA-----CAUCGCUGCCCACCGCCAGAA
(((....((((.((((((......(((((((.((......(((..........))).....-.)).)))))))..((.(((......))).))-----)))))).))))...))).... ( -37.80)
>DroEre_CAF1 5754 110 - 1
G--------GUCGUGAUGCACUGACUCCGCGGGAGAGUAAUGGACCUCCUUUUAGAGUUUU-CCCCCGUCAAGUAUAUUUCAAAACCGAAACAGAAACCAUCGCUGCCCAUCGGCAGAA
.--------.((((((((..((((((..(((((.((((((.((....))..))).....))-).)))))..)))...((((......)))))))....))))))((((....)))))). ( -26.30)
>DroYak_CAF1 5799 118 - 1
GGCACAUAGGCCGUGAUGCACUGACCCCGCGAGGAAAUAAUAGACCUCCUUUCAGGGUUUU-CCCCCGCGGAGCAUGUUUCGAAACCGAAACAGAAACCAUCUCUGCUCAUCGACAGAA
(((......)))((((((....(((((.(.(((((...........))))).).)))))..-.....((((((..(((((((....)))))))........)))))).)))).)).... ( -34.40)
>consensus
GGCACACGGGCCGUGAUGCAGUGACUCCGCGAGGUAAUAAUCGACCUCCUUUCUGAGUUUU_CCCACGCGGAGAAUGAUUCAAAACCGAAACA_____CAUCGCUGCCCAUCGCCAGAA
(((....((((.((((((......(((((((.((........(((((......)).)))....)).))))))).....(((......)))........)))))).))))...))).... (-23.02 = -24.34 +   1.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:54 2006