| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,764,205 – 1,764,298 |
| Length | 93 |
| Max. P | 0.592457 |
| Location | 1,764,205 – 1,764,298 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 72.02 |
| Mean single sequence MFE | -17.19 |
| Consensus MFE | -7.94 |
| Energy contribution | -8.62 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.46 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.592457 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1764205 93 + 22224390 --UGUUAAAGGAAUACAACAGCUCAGAAUAGCCGUAAAAUCAGCGCGGCAAUAUUAAAGUCGGGUUGGAAAAAUUAAAUGGCAAUUUCUUUAAGA --..((((((((((...((.(((......))).))....(((((.((((.........)))).)))))...............)))))))))).. ( -20.20) >DroSec_CAF1 5693 82 + 1 --UGUUAAAGAA-----------CAGAACAGCCGUAAAAUCAGCGCGGCAAAAUAAAAGUCGGGCUGGAAAAACUAAACGUCAAUUUCUUUAAAA --..((((((((-----------..((............(((((.((((.........)))).)))))............))...)))))))).. ( -17.85) >DroSim_CAF1 5714 82 + 1 --UGUUAAAGAA-----------CAGAACAGACGUAAAAUCAGCGCGGCAAAAUAAAAGUCGGGCUGGAAAAACUAAACGUAAAUUUCUUUAAAA --..((((((((-----------........((((....(((((.((((.........)))).))))).........))))....)))))))).. ( -17.32) >DroEre_CAF1 5344 92 + 1 --UGUACAGGAA-UACAACAGUCAAGAACGUCCAAAAAAUCAGCGCGGCAGCAUUGAUGGCGGACUGGAAACAUUAAACGGCAAUCAACUUAAGA --((((......-))))...(((......((((.....(((((.((....)).)))))...))))((....))......)))............. ( -17.60) >DroYak_CAF1 5388 94 + 1 GCAGUAAAGGAA-UACAACAGUGAAGAACGGCCUAAAAAUCAGCGCGGCAGUAUUGAAAGCGGGCUUAAAACGUUAAACGCCAAUCAAUAUAAGA ........((..-...(((.((.....))(((((.....((((..(....)..))))....)))))......))).....))............. ( -13.00) >consensus __UGUUAAAGAA_UACAACAG__CAGAACAGCCGUAAAAUCAGCGCGGCAAAAUUAAAGUCGGGCUGGAAAAAUUAAACGGCAAUUUCUUUAAGA .......................................(((((.((((.........)))).)))))........................... ( -7.94 = -8.62 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:53 2006