Locus 632

Sequence ID X_DroMel_CAF1
Location 1,761,545 – 1,761,665
Length 120
Max. P 0.637781
window1020

overview

Window 0

Location 1,761,545 – 1,761,665
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 78.00
Mean single sequence MFE -37.99
Consensus MFE -22.26
Energy contribution -21.52
Covariance contribution -0.75
Combinations/Pair 1.52
Mean z-score -1.61
Structure conservation index 0.59
SVM decision value 0.22
SVM RNA-class probability 0.637781
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1761545 120 + 22224390
AAUCACUCGGAUGUUGGCCACAUAUUGCUGCUGCAGUUCGUACAGCUGCCAAAGGGUCCUCAUUCGAGACUCAUACUCUUUCUGGGCGCCUGUGCCCAAUACACUACUCAUAUUAGUAUC
.....((((((((..((((.......((((.(((.....)))))))........))))..))))))))..............((((((....))))))....((((.......))))... ( -35.56)
>DroVir_CAF1 3114 120 + 1
GAUUAGUCGUAUGUUGACCGCAUACUGUUGUUCCAGCUCGAAGAGCUGCCACAGCGAGCGCAUCCGGCUCUCGUACUCCUUUUGGGCGGCAACGCCCAGCACGCUGCUAAUGUUGCCAUC
.((((((.(..((((.......(((.(((((..((((((...))))))..)))))(((.((.....)).))))))........(((((....)))))))))..).))))))......... ( -43.20)
>DroEre_CAF1 2695 120 + 1
AAUCAGUCGGAUGUUAGCCACAUAUUGCUGCUCCAGUUCGUACAGCUGCCAAAGGGACCUCAUUCGAGACUCAUACUCUUUCUGGGCACCAGUGCCCAGUACACUACUCAUAUUACCAUC
......(((((((....((.......((((..(......)..))))........))....)))))))..............(((((((....)))))))..................... ( -28.26)
>DroYak_CAF1 2724 120 + 1
UAUCAGUUGGAUAUUGGCCGCAUAUUGCUGCUCCAGUUCGUACAGCUGCCAAAGGGAUCUCAUUCGAGACUCAUACUCUUUCUGGGCACCUAUGCCCAGUACACUAGUCAUAUUAGUAUC
...((((((...(((((..(((......))).))))).....)))))).....(((.((((....))))))).........(((((((....)))))))...((((((...))))))... ( -33.40)
>DroMoj_CAF1 2560 120 + 1
AAUCAGUCGCACAUUUACCGCAAACUGUUGCUCCAGCUCGAAGAGCUGCCACAGCGAGCGCAUCCGGCUCUCGUACUCCUUUUGGGCGGCAACGCCCAGGACGCUGCUGAUGUUGCCAUC
.((((((.((.........((((....))))..((((((...))))))((...(((((.((.....)).)))))........((((((....))))))))..)).))))))......... ( -45.00)
>DroAna_CAF1 2823 120 + 1
GAUCAGCCGGAUAUUGGCCGCGUACUGCUGCUCCAGCUCGUACAGUUGCCACAGGGAUCGCAUCCGGGACUCGUACUCCUUCUGGGCACUGGUGCCCAGGACGUUGGUAAUGUUGCCGUC
......((((((..((((.((((((.((((...))))..)))).)).))))..(......)))))))(((.........(((((((((....)))))))))....((((....))))))) ( -42.50)
>consensus
AAUCAGUCGGAUAUUGGCCGCAUACUGCUGCUCCAGCUCGUACAGCUGCCAAAGGGACCGCAUCCGAGACUCAUACUCCUUCUGGGCACCAAUGCCCAGUACACUACUCAUAUUACCAUC
......((((((...(((.((.....)).))).(((((.....))))).............))))))..............(((((((....)))))))..................... (-22.26 = -21.52 +  -0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:52 2006