Locus 630

Sequence ID X_DroMel_CAF1
Location 1,751,262 – 1,751,368
Length 106
Max. P 0.530140
window1018

overview

Window 8

Location 1,751,262 – 1,751,368
Length 106
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.69
Mean single sequence MFE -40.83
Consensus MFE -30.70
Energy contribution -30.57
Covariance contribution -0.13
Combinations/Pair 1.26
Mean z-score -1.23
Structure conservation index 0.75
SVM decision value -0.01
SVM RNA-class probability 0.530140
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1751262 106 - 22224390
UUGGCCCUCUGUCCGGCCAAUCACGCCCCGUUGCGGGAGCACGGGGCCAUCCACCAUCUGGUGCGACUGCUUAUGCGCGCCUUCCAAGACACAGAGAGGGUGAGU--------------U
((((((........))))))....(((((((.((....)))))))))..((((((....)))).))..((....)).((((((((........).)))))))...--------------. ( -43.70)
>DroVir_CAF1 17437 106 - 1
CUGGCCCUCUGUCCGGCCAAUCAUGCGCCGCUGCGUGAGCACGGCGCCAUACACCAUCUGGUGCGUCUCCUGAUGCGUGCAUUCCAGGAUACAGAACGCGUAAGU--------------A
.(((((........))))).....((((((.(((....)))))))))....((((....)))).((.((((((((....)))..))))).)).....((....))--------------. ( -42.40)
>DroGri_CAF1 18258 105 - 1
CUGGCCCUCUGUCCGGCCAAUCAUGCACCGUUGCGCGAACACGGCGCAAUCCACCAUCUGGUGCGGCUCCUGAUGCGUGCAUUCCAGGACACAGAACGCGUAAGU---------------
.(((((........)))))...((((.(((((((((.......))))))..((((....))))))).((((((((....)))..)))))........))))....--------------- ( -34.10)
>DroWil_CAF1 20563 106 - 1
CUGGCUCUCUGUCCGGCCAAUCAUGCACCAUUGCGUGAGCAUGGAGCUAUACAUCACUUGGUGCGUCUGUUAAUGCGCGCCUUCCAGGACACAGAAAGGGUGAGU--------------C
((.(((((.(((((((........((.((((.((....)))))).))............(((((((........)))))))..)).))))).....))))).)).--------------. ( -36.80)
>DroYak_CAF1 10407 120 - 1
UUGGCUCUCUGUCCGGCCAAUCACGCCCCGUUGCGGGAGCACGGGGCCAUCCACCAUCUGGUGCGGCUGCUAAUGCGCGCCUUCCAAGACACAGAGAGGGUGAGUACUAACUUAACUACU
....((((((((..((((......(((((((.((....)))))))))....((((....)))).))))((....))..............))))))))(((((((....)))).)))... ( -46.30)
>DroMoj_CAF1 17575 106 - 1
CUGGCCCUCUGCCCGGCCAAUCAUGCGCCGUUGCGGGAGCACGGCGCCAUCCAUCAUCUGGUGCGUCUGCUGAUGCGCGCAUUCCAGGACACAGAGCGUGUAAGU--------------A
.(((((........))))).....(((((((.((....))))))))).........((((((((((..((....)))))))..)))))((((.....))))....--------------. ( -41.70)
>consensus
CUGGCCCUCUGUCCGGCCAAUCAUGCACCGUUGCGGGAGCACGGCGCCAUCCACCAUCUGGUGCGUCUGCUGAUGCGCGCAUUCCAGGACACAGAAAGGGUAAGU______________A
.(((((........))))).((..((((((.(((....))))))))).........(((((.(((..(((....))))))...))))).....))......................... (-30.70 = -30.57 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:50 2006