| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 297,563 – 297,658 |
| Length | 95 |
| Max. P | 0.601173 |
| Location | 297,563 – 297,658 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 89.38 |
| Mean single sequence MFE | -25.33 |
| Consensus MFE | -21.45 |
| Energy contribution | -22.09 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.601173 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 297563 95 - 22224390 ACAUAUCGUUUGAGCAUGGCGCGUGUCCCUUUUUUCUGUGGCUUCUUUACCAAUUAGUAGCUGCUCUUCCUAACAACCGCUCCCGUAUCUACGGU------------ ....(((((..((..((((.(((.((...........(..(((.((.........)).)))..)...........)))))..)))).)).)))))------------ ( -19.15) >DroSec_CAF1 40642 95 - 1 ACAUAUCGCUUGAGCAGGGCGCGUGUCCCUUUUUUCUGUGGCUUCUGUAUCAAUUAGUAGCUGCUUUUCCUAAACACCGCUCCCGUAUCUACGGU------------ .......((....)).(((((.((((...........(..(((.(((.......))).)))..).........)))))))))((((....)))).------------ ( -24.45) >DroSim_CAF1 61287 95 - 1 ACAUAUCGCUUGAGCAGGGCGCGUGUCCCUUUUUUCUGUGGCUUCUGUAUCAAUUAGUAGCUGCUUUUCCUAAACACCGCUCCCGUAUCUACGGU------------ .......((....)).(((((.((((...........(..(((.(((.......))).)))..).........)))))))))((((....)))).------------ ( -24.45) >DroEre_CAF1 39613 95 - 1 ACAUAUCGCUUGAGCAGGGCGCGUGUCCCUUUCCGCUGUGGCUUCUGUAUCAAUUAGUAGCUGCUUUUCCCAAACACCGCUCCCGUAUCUACGGU------------ .......((....)).(((((.((((...........(..(((.(((.......))).)))..).........)))))))))((((....)))).------------ ( -24.45) >DroYak_CAF1 61438 106 - 1 AC-UAUCGCUGGAGCAGGGCGCGUGUCCCUUUCUUCUGUGGCUUCUGUAUCAAUUAGUAGCUGCUUUUCCUAAACACCGCUCCCGUAUCUACGGCUACGCUCCCGUA ..-....((.(((((.(((.((((((...........(..(((.(((.......))).)))..).........))).))).)))(((.(....).)))))))).)). ( -34.15) >consensus ACAUAUCGCUUGAGCAGGGCGCGUGUCCCUUUUUUCUGUGGCUUCUGUAUCAAUUAGUAGCUGCUUUUCCUAAACACCGCUCCCGUAUCUACGGU____________ .......((....)).(((((.((((...........(..(((.(((.......))).)))..).........)))))))))((((....))))............. (-21.45 = -22.09 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:45 2006