Locus 628

Sequence ID X_DroMel_CAF1
Location 1,736,651 – 1,736,763
Length 112
Max. P 0.946725
window1015

overview

Window 5

Location 1,736,651 – 1,736,763
Length 112
Sequences 5
Columns 114
Reading direction forward
Mean pairwise identity 93.44
Mean single sequence MFE -29.72
Consensus MFE -26.80
Energy contribution -26.60
Covariance contribution -0.20
Combinations/Pair 1.21
Mean z-score -1.52
Structure conservation index 0.90
SVM decision value 1.37
SVM RNA-class probability 0.946725
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1736651 112 + 22224390
UUUGCUGGCAUCAAUAUUUAAUCUGUUGCCUAGCGUGACAGUCGGCCACACUGCACCUCA--CAUAACAUAACCGAAAAAUGAACAAAUGUUUUAGGUGCCAGCCCCGGAUAUC
...(((((((((...........(((((...((.(((.((((.(....))))))))))..--..)))))............((((....))))..))))))))).......... ( -27.10)
>DroSec_CAF1 3103 112 + 1
UUUGCUGGCAUCGAUAUUCAGGCUGUUGCCUAGCGUGACAGUCGGCCACACUGGACCUCA--CAUAACAUAACCGAAAAAUGAACAAAUGUUUUAGGUGCCAGCCCCGGAUAUC
...(((((((((....(((.((((((..(.....)..))))))((((.....)).))...--............)))....((((....))))..))))))))).......... ( -34.50)
>DroSim_CAF1 2572 112 + 1
UUUGUUGGCAUCGAUAUUCAGGCUGUUGCCUAGCGUGACAGUCGGCCACACUGGACCUCA--CAUAACAUAACCGAAAAAUGAACAAAUGUUUUAGGUGCCAGCCCCGGAUAUC
...(((((((((....(((.((((((..(.....)..))))))((((.....)).))...--............)))....((((....))))..))))))))).......... ( -32.10)
>DroEre_CAF1 978 112 + 1
UUUGUUGGCACUCAAAUUUAGGUUGUUACCUAGCGUCACAGUCGGCCACACUGGACCUCA--CAUAACAUAACCGAAAAAUGAACAAAUGUUUUAGGUGCCAGCCCCGGAUAUU
...(((((((((........((((((((...((.(((.((((.(....))))))))))..--..)))))..))).......((((....))))..))))))))).......... ( -28.00)
>DroYak_CAF1 10078 114 + 1
UUUGUUGGCAUCCAUAUUUAGGCUGUUACCUAGCGUCACAGUCGGCCACACUGGACCUCACACAUAACAUAACCGAAAAAUGAACAAAUGUUUUAGGUGCCAGCCCCGGAUAUU
...(((((((((.((((((.((((((.((.....)).))))))((((.....)).))............................))))))....))))))))).......... ( -26.90)
>consensus
UUUGUUGGCAUCCAUAUUUAGGCUGUUGCCUAGCGUGACAGUCGGCCACACUGGACCUCA__CAUAACAUAACCGAAAAAUGAACAAAUGUUUUAGGUGCCAGCCCCGGAUAUC
...(((((((((....(((.(((((((((.....)))))))))((((.....)).)).................)))....((((....))))..))))))))).......... (-26.80 = -26.60 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:47 2006