Locus 625

Sequence ID X_DroMel_CAF1
Location 1,730,764 – 1,730,884
Length 120
Max. P 0.858922
window1010

overview

Window 0

Location 1,730,764 – 1,730,884
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.08
Mean single sequence MFE -42.16
Consensus MFE -37.70
Energy contribution -38.86
Covariance contribution 1.16
Combinations/Pair 1.08
Mean z-score -1.40
Structure conservation index 0.89
SVM decision value 0.82
SVM RNA-class probability 0.858922
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1730764 120 - 22224390
AGGCAGUCUUCGAUGCCUACCUCCAUCUUGAUGGGGUUGUUCAUCUCCGGGUAGCUGCACAGUGUGUGCACGGCGAUGUCGACCUCCUUCGUUAUGUCGCUGAUCCGCCUGACGAUGGUU
(((((........)))))(((.((((....)))))))...(((((..(((((...(((((.....)))))((((((((((((......)))..)))))))))....)))))..))))).. ( -43.20)
>DroSec_CAF1 2017 120 - 1
AGGCAGUCUUCGAUGCCUACCUCCAUCUUGAUGGGAUUGUUCAUCUCCGGGUAGCUGCACAGUGUGUGCACGGCGAUGUCGACCUCCUUGGUUAUGUCGCUGAUCCGCCUGACUAUAGUU
((((.......((((..((..(((((....)))))..))..))))...((((...(((((.....)))))(((((((((.((((.....))))))))))))))))))))).......... ( -40.70)
>DroSim_CAF1 2216 120 - 1
AGGCAGUCUUCGAUGCCUACCUCCAUCUUGAUGGGAUUGUUCAUCUCCGGGUAGCUGCACAGUGUGUGCACGGCGAUGUCGACCUCCUUGGUUAUGUCGCUGAUCCGCCUGACUAUGGUU
(((((........)))))....((((...((((((....))))))..(((((...(((((.....)))))(((((((((.((((.....)))))))))))))....)))))...)))).. ( -41.40)
>DroEre_CAF1 2136 120 - 1
AGGCAGUCUUCGAUGCCUACCUCCAUCUUGAUGGGGUUGUUCAUCUCCGGGUAGCUGCACAGUGUGUGCACGGCAAUGUCGACCUCCUUGGUUAUGUCGCUGAUCCGCCUGACGAUCGUU
((((.......((((...(((.((((....)))))))....))))...((((...(((((.....)))))((((.((((.((((.....)))))))).)))))))))))).......... ( -38.50)
>DroYak_CAF1 2222 120 - 1
AGGCAGUCUUCAAUGCCAACCUCCAUCUUGAUGGGGUUGUUCAUCUCCGGGUAGCUACAUAGUGUGUGUACGGCGAUGUCAACCUCCUUGGUUAUGUCGCUGAGUCGCCUGACGAUGGUU
.((((........))))((((.((((....))))))))..(((((..((((..(((((((.....)))).(((((((((.((((.....))))))))))))))))..))))..))))).. ( -47.00)
>consensus
AGGCAGUCUUCGAUGCCUACCUCCAUCUUGAUGGGGUUGUUCAUCUCCGGGUAGCUGCACAGUGUGUGCACGGCGAUGUCGACCUCCUUGGUUAUGUCGCUGAUCCGCCUGACGAUGGUU
(((((........)))))..((((((....))))))....(((((..(((((...(((((.....)))))(((((((((.((((.....)))))))))))))....)))))..))))).. (-37.70 = -38.86 +   1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:42 2006