Locus 623

Sequence ID X_DroMel_CAF1
Location 1,729,899 – 1,730,011
Length 112
Max. P 0.633837
window1007

overview

Window 7

Location 1,729,899 – 1,730,011
Length 112
Sequences 4
Columns 119
Reading direction reverse
Mean pairwise identity 82.97
Mean single sequence MFE -26.05
Consensus MFE -22.08
Energy contribution -21.89
Covariance contribution -0.19
Combinations/Pair 1.13
Mean z-score -1.50
Structure conservation index 0.85
SVM decision value 0.21
SVM RNA-class probability 0.633837
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1729899 112 - 22224390
CUGAUUGUUAUUAAGGAGUGCCAGCGCUGGUACUUUUCAGUAUUCAGUAUUUGCAUGGUAUUUCU-UUAAGAAACACAUA--CGGAAUA----AUUAACGAAACAAUUGAUUGUGGAUC
(((((((((.((((((((((((((((((((((((....)))).)))))....)).))))).))))-))))..)))).)).--))).(((----(((((........))))))))..... ( -25.50)
>DroSec_CAF1 1149 113 - 1
CCGAUUGUUAUUAAGGAGUGCCAGCGCUGGUACUUUUUAGUAUUCAGUAUUUGCACGGUAUUUUUUUUUUAAAACACAUA--CGGAAAA----UUUAACGAAACAAUUGAUUGUGGAUC
.((((((((((((((((((((((....))))))))))))))..............((.((..(((((..((.......))--..)))))----..)).)).)))))))).......... ( -25.60)
>DroSim_CAF1 1349 112 - 1
CCGAUUGUUAUUAAGGAGUGCCAGCGCUGGUACUUUUUAGUAUUCAGUAUUUGCAUGGUAUUUCU-UUAAAAAACACAUA--CGGAAAA----UUUAACGAAACAAUUGAUUGUGGAUC
.((((((((...((((((((((((((((((((((....)))).)))))....)).))))))))))-).............--((.....----.....)).)))))))).......... ( -27.80)
>DroEre_CAF1 1268 117 - 1
CCGAGUGUUAUAAAGGAGUGCCAGCGCUGGUACUUUUCAGUAUUCAGUAUUUGCAUGGUAUUCUU-CAAAGAUUCUUCUUCAUGGUAUUCUUCUUCAACAAAACAAUUA-UUACCGAUA
..(((((..((..(((((((((((((((((((((....)))).)))))....)).))))))))))-..((((....)))).))..)))))...................-......... ( -25.30)
>consensus
CCGAUUGUUAUUAAGGAGUGCCAGCGCUGGUACUUUUCAGUAUUCAGUAUUUGCAUGGUAUUUCU_UUAAAAAACACAUA__CGGAAAA____UUUAACGAAACAAUUGAUUGUGGAUC
.((((((((....(((((((((((((((((((((....)))).)))))....)).)))))))))).................((..............)).)))))))).......... (-22.08 = -21.89 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:39 2006