Locus 621

Sequence ID X_DroMel_CAF1
Location 1,727,091 – 1,727,203
Length 112
Max. P 0.586611
window1005

overview

Window 5

Location 1,727,091 – 1,727,203
Length 112
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 82.56
Mean single sequence MFE -39.41
Consensus MFE -29.33
Energy contribution -28.58
Covariance contribution -0.74
Combinations/Pair 1.31
Mean z-score -1.49
Structure conservation index 0.74
SVM decision value 0.11
SVM RNA-class probability 0.586611
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1727091 112 + 22224390
AGAGCUGUGGCUGGCAAUGCGAGUGGCAUCAAGGAGGCACUUCAACAGCACAUAAUGCCACUGGUGAGGACCCAAUACGUUAGUAGCCAUAGCUCAUGGCUUCCAAAGCUAG
.((((((((((((.(...(((((((((((...(...((.........)).)...))))))))(((....))).....)))..))))))))))))).(((((.....))))). ( -42.00)
>DroPse_CAF1 2076 112 + 1
AGGGUUGUCUCCGGCAAUGCCAAUGGGAUGAAGGAGGCGCUCCAGCAACACAUUCUGCCCCUGCUGCGGGUGCAGUACGUCAGUGGGCACAGCACCUGGCUGCCGAGGCUGG
.((((.((((((..((...((....)).))..))))))))))((((..(......((((((((((((....)))).....))).)))))((((.....))))..)..)))). ( -41.80)
>DroSim_CAF1 3244 112 + 1
AGAGCUGUGGCAGGCAAUGCGAGUGGCAUCAAGGAGGCACUUCAACAGCACAUAAUGCCACUGCUGAGGACCCAAUACGUUAGUAGCCAUAGCUCAUGGCUUCCAAAGCUAG
.((((((((((.(((...((.((((((((...(...((.........)).)...))))))))))....).))...(((....))))))))))))).(((((.....))))). ( -41.30)
>DroEre_CAF1 2021 112 + 1
AGAGCUGUGGCAGGCAAUGCGAGUGGCAUCAAGGAGGCACUCCAACAGCACAUAAUGCCACUGCUAAGGACCCAAUACGUUAAUAGCCAUAGCACAUGGCUUCCAAAGCUAG
...((((((((.......((.((((((((...((((...))))...........))))))))))...(....)............))))))))...(((((.....))))). ( -33.74)
>DroYak_CAF1 2193 112 + 1
AGAGCUGUGACAGGCAAUGCAAGUGGCAUCAAGGAGGCACUCCAACAGCACAUAAUGCCAUUGCUAAGGACCCAAUACGUUAGCAGCCAUAGCACAUGGCUUCCAAAGCUAG
...((((((...((((((((.....))))...((((...))))............)))).(((((((.(........).))))))).))))))...(((((.....))))). ( -32.80)
>DroPer_CAF1 2074 112 + 1
AGGGUUGUCUCCGGCAAUGCCAAUGGGAUGAAGGAGGCGCUCCAGCAACACAUUCUGCCCCUGCUGCGGGUGCAGUACGUCAGUGGGCACAGCGCCUGGCUGCCGCGGCUGG
.((..(((((((..((...((....)).))..)))))))..)).(((........))).((.(((((((((((..(((....))).))))(((.....))).))))))).)) ( -44.80)
>consensus
AGAGCUGUGGCAGGCAAUGCGAGUGGCAUCAAGGAGGCACUCCAACAGCACAUAAUGCCACUGCUGAGGACCCAAUACGUUAGUAGCCAUAGCACAUGGCUUCCAAAGCUAG
...((((((((.((((((((.....))))...((((...))))............))))..((((((.(........).))))))))))))))...(((((.....))))). (-29.33 = -28.58 +  -0.74)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:37 2006