| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 284,842 – 284,949 |
| Length | 107 |
| Max. P | 0.999605 |
| Location | 284,842 – 284,949 |
|---|---|
| Length | 107 |
| Sequences | 4 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 76.64 |
| Mean single sequence MFE | -29.35 |
| Consensus MFE | -18.34 |
| Energy contribution | -19.53 |
| Covariance contribution | 1.19 |
| Combinations/Pair | 1.22 |
| Mean z-score | -3.12 |
| Structure conservation index | 0.62 |
| SVM decision value | 3.78 |
| SVM RNA-class probability | 0.999605 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 284842 107 + 22224390 -----------CAUACAGGCAUACAUACAUGUACAAUGUGUAUAUACAUUUCUUGAUUUUGCAAAGCUAGCACACUUAUGGC-CGAGAAAUAUGUAUUUCGGUUAGUAUGUGCAUUUCA -----------......((((((.((((((.....)))))).))).......(((......))).))).(((((....((((-(((((........)))))))))...)))))...... ( -24.80) >DroSec_CAF1 33799 105 + 1 -----------CAUAUGUACAUGCAUGCA--UACAAUGUGUAUGUACACAUCUUGAUUUUGCAAAGCUGGCAAAGUUAUGAC-CGAGAAAUAUGUAUUGCGGAUAGUAUGUGCAUUUGA -----------((.((((((((((.((((--((((.(((((....)))))((.(((((((((.......))))))))).)).-.........)))).))))....)))))))))).)). ( -32.80) >DroSim_CAF1 53480 105 + 1 -----------CAUAUGUACAUGCAUGCA--UACAAUGUGUAUGUACACAUCUUGAUUUUGCACAGCUGGCAAAGUUAUGAC-CGAGAAAUAUGUAUUGCGGAUAGUAUGUGCAUUUGA -----------((.((((((((((.((((--((((.(((((....)))))((.(((((((((.(....)))))))))).)).-.........)))).))))....)))))))))).)). ( -33.00) >DroEre_CAF1 33029 110 + 1 UAACUGAUAUACAUAUGUACAUACAAACA--UACA-CGUGCACGCACGUUUCUUAAUUUUGCAAAGCUGGCAUCUUAAUGAUAC--GAAAUUUGUAUUGC----AGUAUGUACAUUUGA ...........((.((((((((((.....--...(-((((....)))))..........((((((..(.(.(((.....))).)--.)..))))))....----.)))))))))).)). ( -26.80) >consensus ___________CAUAUGUACAUACAUACA__UACAAUGUGUAUGUACACAUCUUGAUUUUGCAAAGCUGGCAAAGUUAUGAC_CGAGAAAUAUGUAUUGCGGAUAGUAUGUGCAUUUGA ...........((.((((((((((............((((....))))..((.(((((((((.......))))))))).))........................)))))))))).)). (-18.34 = -19.53 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:43 2006