Locus 617

Sequence ID X_DroMel_CAF1
Location 1,699,446 – 1,699,537
Length 91
Max. P 0.950935
window999

overview

Window 9

Location 1,699,446 – 1,699,537
Length 91
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 82.72
Mean single sequence MFE -34.72
Consensus MFE -23.33
Energy contribution -24.95
Covariance contribution 1.62
Combinations/Pair 1.19
Mean z-score -4.10
Structure conservation index 0.67
SVM decision value 1.41
SVM RNA-class probability 0.950935
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1699446 91 + 22224390
-----UUUUGUUUAUAUCGCGAGCGUUCGCUAAUCGCGCCAUUUAGUUGUCUUUCAACUGCAAGUGCGGGCGGUUAGCGAAGGUUCGCCAACAAAU
-----.((((((......((((((.((((((((((((.(((((((((((.....))))))..)))).).)))))))))))).)))))).)))))). ( -42.00)
>DroVir_CAF1 19347 78 + 1
AUACAUAUUGUUUAUAUCGCGCUCG-UCGCUAAACGCGCCAUUUAGUUUGAUUUGAGUUGCAAGUGCAAGCGGGCG----AGC-------------
....................(((((-(((((..((..((.((((((......)))))).))..))...))).))))----)))------------- ( -20.60)
>DroSec_CAF1 39636 91 + 1
-----UGUUGUUUAUAUCGCGAGCGUUCGCUAAUCGCGCCAUUUAGUUGUCUUUCAACUGCAAGUGUAGGCGGUUAGCGAAGGUUCGCCACCAAAU
-----.............((((((.((((((((((((..((((((((((.....))))))..))))...)))))))))))).))))))........ ( -37.70)
>DroSim_CAF1 33777 91 + 1
-----UUUUGUUUAUAUCGCGAGCGUUCGCUAAUCGCGCCAUUUAGUUGUCUUUCAACUGCAAGUGCAGGCGGUUAGCGAAGGUUCGCCACCAAAU
-----.............((((((.((((((((((((..((((((((((.....))))))..))))...)))))))))))).))))))........ ( -37.70)
>DroEre_CAF1 35598 90 + 1
-----UUUUGUUUAUAUCGCGAGCGUUCGCUAAUCGCGCCAUUUAGUUGGCUUUCAACUGCAAGUGCAGGCGGUUAG-UAAGGCUCGCCACCAAAU
-----.............((((((.((.(((((((((((((......))))......((((....))))))))))))-))).))))))........ ( -38.10)
>DroYak_CAF1 33936 91 + 1
-----UUUUGUUUAUAUCGCGAGCGUUCGCUAAUCGCGCCAUUUAGUUGGCUUUCAGCUGCAAGUGCAGGCGGUUAGCUAAGGUUCCCUACCAAGU
-----...............((((.((.(((((((((((((......))))......((((....))))))))))))).)).)))).......... ( -32.20)
>consensus
_____UUUUGUUUAUAUCGCGAGCGUUCGCUAAUCGCGCCAUUUAGUUGGCUUUCAACUGCAAGUGCAGGCGGUUAGCGAAGGUUCGCCACCAAAU
..................((((((.((.(((((((((..((((((((((.....))))))..))))...))))))))).)).))))))........ (-23.33 = -24.95 +   1.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:32 2006