Locus 615

Sequence ID X_DroMel_CAF1
Location 1,692,150 – 1,692,267
Length 117
Max. P 0.521289
window996

overview

Window 6

Location 1,692,150 – 1,692,267
Length 117
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 87.28
Mean single sequence MFE -27.72
Consensus MFE -20.16
Energy contribution -20.56
Covariance contribution 0.40
Combinations/Pair 1.06
Mean z-score -1.58
Structure conservation index 0.73
SVM decision value -0.02
SVM RNA-class probability 0.521289
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1692150 117 - 22224390
UACAUAAAUAAAAUGUGUUUAUAUGUAAAUCAGGAGCGUAGUCCCGGG-GGGAUAGACAGCAAACGUGCUGAUUUAGCGCC-AGUGUUUCAAUUUGUUUAUGCUCGAAUAUCAAAUUUA
((((((((((.....))))..))))))......((((((((((((...-))))).((.((((...((((((...)))))).-..))))))........))))))).............. ( -26.50)
>DroSec_CAF1 32287 118 - 1
UACAUAAAUAAAAUGUGUUUAUAUGUAAAUCAGGAGCGUAGUCCCGGGGGGGAUAGAAAGCAAACGUGCUGAUUUAGCGCC-AGUGCUUCAGUUUGUUUAUGUUCGAAUAUCAAAUUUA
.(((((((((((.((.((((...((.....)).))))...(((((....)))))...(((((...((((((...)))))).-..))))))).)))))))))))................ ( -28.70)
>DroSim_CAF1 26411 118 - 1
UACAUAAAUAAAAUGUGUUUAUAUGUAAAUCAGGAGCGUAGUCCCGGGGGGGAUAGAAAGCAAACGUGCUGAUUUAGCGCC-AGUGCUUCAGUUUGUUUAUGUUCGAAUAUCAAAUUUA
.(((((((((((.((.((((...((.....)).))))...(((((....)))))...(((((...((((((...)))))).-..))))))).)))))))))))................ ( -28.70)
>DroEre_CAF1 28034 116 - 1
UACAUAAAUAAAAUGUGUUUAUAUGUAAAUCAGGUGCGUAGUCCCAGG-GGGAUGGAGAGCA-ACGUGCUG-UUUAGCGCCAAGUGUUUCAUUUUGUUUAUGUUUGAAUACAAAAUGUA
.((((((((((((((.(((((....)))))..(((((...(((((...-)))))(((.(((.-....))).-))).)))))........))))))))))))))................ ( -31.30)
>DroYak_CAF1 26164 101 - 1
UACAUAAAUAAAAUGUGUUUAUAUGUAAAUCAGGUGCGUAGUCCCAGG-GGGAUAGAGAGCA-ACGUGUU----------------UUUCAUUUUGUUUAUGUUUGAAAACAAAAUUUA
.((((((((((((((.....((((((........(((.(.(((((...-))))).)...)))-)))))).----------------...))))))))))))))................ ( -23.40)
>consensus
UACAUAAAUAAAAUGUGUUUAUAUGUAAAUCAGGAGCGUAGUCCCGGG_GGGAUAGAAAGCAAACGUGCUGAUUUAGCGCC_AGUGUUUCAGUUUGUUUAUGUUCGAAUAUCAAAUUUA
.(((((((((((.((.(((((....)))))))(((((...(((((....)))))....((((....))))...............)))))..)))))))))))................ (-20.16 = -20.56 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:29 2006