Locus 613

Sequence ID X_DroMel_CAF1
Location 1,688,174 – 1,688,282
Length 108
Max. P 0.999594
window993

overview

Window 3

Location 1,688,174 – 1,688,282
Length 108
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 91.20
Mean single sequence MFE -42.26
Consensus MFE -39.32
Energy contribution -39.08
Covariance contribution -0.24
Combinations/Pair 1.03
Mean z-score -2.30
Structure conservation index 0.93
SVM decision value 3.76
SVM RNA-class probability 0.999594
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1688174 108 - 22224390
GCUUAGUCAGCGAUCCGCUU-UUGAUUGUUAGUCAGGUGGA--A----ACAUACACCUGGCAUUCGGGACUUACUUUUGCACUUGGCCAGGCCACUGGCCACCUGCAGGAAUCCG
....(((((((((((.....-..))))))).((((((((..--.----.....))))))))......))))...(((((((..(((((((....)))))))..)))))))..... ( -44.10)
>DroSec_CAF1 28379 108 - 1
GCUUAGUCAGCGAGCCGUUU-UUGAUGUUGAGUCAGGUGGA--A----ACACACACCUGGCAUUUGGGACUUACUUUUGCACUUGGCCAGGCCACUGGCCACCUGCAGGAAUCCA
......((((((...((...-.)).))))))((((((((..--.----.....)))))))).....(((.....(((((((..(((((((....)))))))..))))))).))). ( -40.40)
>DroSim_CAF1 22453 108 - 1
GCUUAGUCAGCGAGCCGUUU-UUGAUUGUGAGUCAGGUGGA--A----ACACACACCUGGCAUUUGGGACUUACUUUUGCACUUGGCCAGGCCACUGGCCACCUGCAGGAAUCCG
....((((.((((..((...-.)).))))..((((((((..--.----.....))))))))......))))...(((((((..(((((((....)))))))..)))))))..... ( -40.60)
>DroEre_CAF1 24127 110 - 1
GCUUAGUCAGCGAGCCGCUU-UUGAUUAUGAGUCAGGUGGGGUA----AAACACACCUGGCGUUCGGGACUUACUUUUGCACUUGGCCAGGCCACUGGCCACCUGCAGGAAUCCG
....((((..(((((..(..-..).......((((((((.(...----...).))))))))))))).))))...(((((((..(((((((....)))))))..)))))))..... ( -43.40)
>DroYak_CAF1 22100 115 - 1
GCUUAGUCAGCGAGCCGCUUUUUGAUUAUGAGUCAGGUGGUGUAGGUUAGCCACACCUGGCAUUCGGGACUUACUUUUGCACUUGGCCAGGCCGCUGGCCACCUGCAGGAAUCCG
....((((..((((((....((((((.....)))))).(((((.((....))))))).)))..))).))))...(((((((..(((((((....)))))))..)))))))..... ( -42.80)
>consensus
GCUUAGUCAGCGAGCCGCUU_UUGAUUAUGAGUCAGGUGGA__A____ACACACACCUGGCAUUCGGGACUUACUUUUGCACUUGGCCAGGCCACUGGCCACCUGCAGGAAUCCG
....((((((((...))))............((((((((..............))))))))......))))...(((((((..(((((((....)))))))..)))))))..... (-39.32 = -39.08 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:26 2006