Locus 612

Sequence ID X_DroMel_CAF1
Location 1,687,815 – 1,687,907
Length 92
Max. P 0.526166
window992

overview

Window 2

Location 1,687,815 – 1,687,907
Length 92
Sequences 3
Columns 105
Reading direction forward
Mean pairwise identity 74.75
Mean single sequence MFE -12.82
Consensus MFE -7.70
Energy contribution -8.70
Covariance contribution 1.00
Combinations/Pair 1.13
Mean z-score -1.53
Structure conservation index 0.60
SVM decision value -0.01
SVM RNA-class probability 0.526166
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1687815 92 + 22224390
AUUCAGUUAGUUCCCCGAAAGGAUACGGUUCAACUGCUUCUGUGAAA-------------AAUAUAUCCAAACAAAUUACAAAAAAUACAAAAAAAAAAAACUCA
...(((((.(..((((....))....))..))))))....(((((..-------------................)))))........................ (  -9.37)
>DroEre_CAF1 23737 87 + 1
AUUCAGUUAGUUCCCCGUAAGGAUACGGCUCAACUGCUUGUGUGCAAAAAAAG------AAAUAUAUCCCUACAAAUUACAAACAA------------GAACUAA
......(((((((.((....))(((((((......)).)))))..........------...........................------------))))))) ( -14.10)
>DroYak_CAF1 21677 93 + 1
AUUCAGUUAGUUCCCCGAAAGGAUACGGCUCAACUGCUUGUGUGCAAAAAAAGCAAAAAAAUUAUACCCCUAAAAAUUACAAACAA------------AAACUGA
..((((((.((...((....))..)).(((....(((......))).....)))................................------------.)))))) ( -15.00)
>consensus
AUUCAGUUAGUUCCCCGAAAGGAUACGGCUCAACUGCUUGUGUGCAAAAAAAG______AAAUAUAUCCCUACAAAUUACAAACAA____________AAACUAA
......((((((..((....))(((((((......)).)))))........................................................)))))) ( -7.70 =  -8.70 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:26 2006