Locus 610

Sequence ID X_DroMel_CAF1
Location 1,686,775 – 1,686,887
Length 112
Max. P 0.771839
window986

overview

Window 6

Location 1,686,775 – 1,686,887
Length 112
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 78.78
Mean single sequence MFE -27.98
Consensus MFE -16.80
Energy contribution -19.80
Covariance contribution 3.00
Combinations/Pair 1.15
Mean z-score -1.89
Structure conservation index 0.60
SVM decision value 0.53
SVM RNA-class probability 0.771839
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1686775 112 + 22224390
AGCAUCGUUUACAGCCGAACAUAAGUGGCUCACGUGCUUUUUCAGUCGCACAGUGGAAUUAAUCCGCUUAACCCAUGCCUUUUAUUUUUGGCUGAAUACUGUACUUACCCA--------U
.(((..((...((((((((.(((((.(((....((((..........))))((((((.....))))))........))).))))).))))))))...))))).........--------. ( -31.80)
>DroSec_CAF1 26994 112 + 1
AGCAUCGUUUAAAGCCGAACAGAAGUGGCUCACGUGCUUUUUCAGUCGCACAGUGGAAUUAAUCCGCUGAACUCAUAACUUUUAUUUUUGGCUGAAAACUGUACUUACCCA--------U
.(((..((((..(((((((..((((.(((......))).)))).......(((((((.....))))))).................)))))))..))))))).........--------. ( -28.40)
>DroSim_CAF1 21068 100 + 1
AGCAUCGUUUACAGCCGAACAGAAGUGGCUCACGUGCUU-UUCAGUCGUACAGUGGAAUUAAUCCGCUGAACUCAUGACUUUUAUUUUUGGCUGAAAACUG-------------------
......((((.((((((((..((((.(((......))))-)))((((((.(((((((.....))))))).....))))))......)))))))).))))..------------------- ( -32.30)
>DroEre_CAF1 22672 118 + 1
AGCAUCGUUCACAGCCGAACAGAAGUGGCUCACGUGCUUUUUCGGUCGCACAGUGGAUUAA-UCUCCAUAAAUCGAAACUUUUAUUA-CAGCUGAAAACUCUCCUUGGCAACAAGGCAAC
.((...(((..((((.(((.((((((..(....((((..........)))).(((((....-..))))).....)..)))))).)).-).))))..)))....((((....))))))... ( -29.80)
>DroYak_CAF1 20616 110 + 1
AGCAUCGUGCACAGCCGAACAGAAGUGGCUCACGUGCUUUUUCAGUCGCACAAUGGAAUAAGUCCCCAAAAAUCGAAACUUUUAUUA-AAGCUAAAAGCUCUCCUUACCAA---------
((((.((((...(((((........))))))))))))).......(((.....(((.........))).....)))...........-.(((.....)))...........--------- ( -17.60)
>consensus
AGCAUCGUUUACAGCCGAACAGAAGUGGCUCACGUGCUUUUUCAGUCGCACAGUGGAAUUAAUCCGCUGAACUCAUAACUUUUAUUUUUGGCUGAAAACUGUACUUACCAA_________
......((((.((((((((.((((((.......((((..........)))).(((((.....)))))..........))))))...)))))))).))))..................... (-16.80 = -19.80 +   3.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:20 2006