Locus 61

Sequence ID X_DroMel_CAF1
Location 277,665 – 277,775
Length 110
Max. P 0.544013
window75

overview

Window 5

Location 277,665 – 277,775
Length 110
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 87.67
Mean single sequence MFE -26.82
Consensus MFE -20.64
Energy contribution -21.40
Covariance contribution 0.76
Combinations/Pair 1.11
Mean z-score -1.50
Structure conservation index 0.77
SVM decision value 0.02
SVM RNA-class probability 0.544013
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 277665 110 - 22224390
UUUAUUUGAAUCGCGGGAUCAUUGG----GUCCAAUCGCCCUUUAGGUGUCCUACAUUUUUUUGUUAUAAUCUUCAAGCUUGUCCUCUAUCUGAUGGACACUUUCGAUGCGAUA
.........(((((.(((((....)----)))).(((((.....((((.....(((......)))....))))....)).(((((((.....)).))))).....)))))))). ( -26.20)
>DroSec_CAF1 25097 109 - 1
UUUAUCUGAAUCGCGGGAUCAUUG-----GUCCAAUCGCCCUUCACGUGUCCUACAUUUGUUUGUUGCAAUCUUCAAGCUUGUCUUCUAUCUGAUGGACAAUUUCGAUGCGAUA
......((((..(((((((.....-----))))...)))..))))((((((........(((((..........)))))((((((((.....)).))))))....))))))... ( -23.70)
>DroSim_CAF1 46475 109 - 1
UUUAUCUCAAAAGCGGGAUCAUUG-----GUCCAAUCGACCUUCACGUGUCCUACAUUUGUUUGUUGCAAUCUUCAAGCUUGUCUUCUAUCUGAUGGACACUUUCGAUGCGAUA
.......((((.(..(((.(((.(-----(((.....)))).....))))))..).))))..(((((((.((...(((..(((((((.....)).))))))))..))))))))) ( -23.00)
>DroEre_CAF1 25356 114 - 1
UUAAUCUGAAUCGCGGGAUCAUUGGUCCGGUCCAAUCGCUCUUCACGUGUCCCACAUUUGUUUGCUACAAUCUUCAAACUUGUCCUCUAUCUGAUGGACACUUUGGAUGCGAUA
.........(((((.((((.....)))).((((((..((....((.(((.....))).))...))...............(((((((.....)).)))))..))))))))))). ( -29.30)
>DroYak_CAF1 47305 114 - 1
UUAAACUGAAUCGCGGGAUCAUUGGUCCGGUCCAAUUGCUCUCCAUGUGUCCUACAUUUGUUUGCUACAAUCUUCAGACUUGUCUCCUAUCUGAUGGACACUUUGGAUGCGAUA
.........((((((((...(((((......)))))..)))((((.((((((.....((((.....))))...(((((...........))))).))))))..)))).))))). ( -31.90)
>consensus
UUUAUCUGAAUCGCGGGAUCAUUGG____GUCCAAUCGCCCUUCACGUGUCCUACAUUUGUUUGUUACAAUCUUCAAGCUUGUCUUCUAUCUGAUGGACACUUUCGAUGCGAUA
.........((((((((...(((((......)))))..))).....((((((.......(((((..........)))))..(((........))))))))).......))))). (-20.64 = -21.40 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:42 2006