Locus 607

Sequence ID X_DroMel_CAF1
Location 1,683,765 – 1,683,884
Length 119
Max. P 0.517192
window983

overview

Window 3

Location 1,683,765 – 1,683,884
Length 119
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 84.91
Mean single sequence MFE -34.40
Consensus MFE -25.09
Energy contribution -25.15
Covariance contribution 0.06
Combinations/Pair 1.07
Mean z-score -1.43
Structure conservation index 0.73
SVM decision value -0.03
SVM RNA-class probability 0.517192
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1683765 119 + 22224390
CGG-GGAUCCGAUACCCGCCUCCCUUUCGCAAACGUGUUUGCAAACGGAUCGUACACGAAAGUCGGGGCCGUAUGCCAAGUGUACAUAUACAUAUGUAUGUAUGUACAUACAAAUCUGUC
.((-(((..((.....))..)))))...(((((....)))))..((((((.(((((((.....)..(((.....)))..)))))).........(((((((....))))))).)))))). ( -35.20)
>DroSec_CAF1 24107 112 + 1
CGGGGGAUCCGAUACCCGCCUCCCUUUCGCAAACGUGUUUGCAAACGGAUCGUACACGAAAGUCGGGGCCGUGUGCCAAGUGUACAUACACAUAU--------GUACAUACAAAUAUGUC
.((((((..((.....))..))))))......(((((((((((.((((.(((...((....)))))..)))).)))...(((((((((....)))--------))))))..)))))))). ( -35.20)
>DroSim_CAF1 17935 112 + 1
CGGGGGAUCCGAUACCCGCCUCCCUUUCGCAAACGUGUUUGCCAACGGAUCGUACACGAAAGUCGGGGCCGUGUGCCAAGUGUACAUACACAUAU--------GUACAUACAAAUAUGUC
.((((((..((.....))..))))))......(((((((((...((((.(((...((....)))))..)))).......(((((((((....)))--------)))))).))))))))). ( -33.60)
>DroEre_CAF1 19653 101 + 1
CGGGGUAUGCGAUACCCGCCUCCCUUUCGCAAACGUGUUUGCAAGCGGAUCGUACACGAAAGUCGGGGCCGUAUGCCAAGUGCAUAUAUGUAU----------------AUAUGUCU---
...((((((((...((((.(((((((..(((((....)))))))).)))(((....)))..).))))..))))))))....(((((((....)----------------))))))..--- ( -33.60)
>consensus
CGGGGGAUCCGAUACCCGCCUCCCUUUCGCAAACGUGUUUGCAAACGGAUCGUACACGAAAGUCGGGGCCGUAUGCCAAGUGUACAUACACAUAU________GUACAUACAAAUAUGUC
.(((..........)))(((((.((((((...(((.(((((....))))))))...))))))..))))).((((((.....))))))................................. (-25.09 = -25.15 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:17 2006