Locus 606

Sequence ID X_DroMel_CAF1
Location 1,682,705 – 1,682,797
Length 92
Max. P 0.805813
window982

overview

Window 2

Location 1,682,705 – 1,682,797
Length 92
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 97.83
Mean single sequence MFE -23.32
Consensus MFE -21.06
Energy contribution -20.78
Covariance contribution -0.28
Combinations/Pair 1.07
Mean z-score -1.46
Structure conservation index 0.90
SVM decision value 0.63
SVM RNA-class probability 0.805813
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1682705 92 - 22224390
CUCCCUCGCUCCUUUGUGAUUGUUGUUGAUUUCAUUGUUGUUGCCGGCGCAUUUAUUGCAUGCGAUCAUCAUGACGUUCACAGCGACAACAA
.....(((((.....((((.(((..((((((.(((.((((....))))(((.....)))))).)))))..)..))).)))))))))...... ( -22.00)
>DroSec_CAF1 23020 92 - 1
CUCCCUCGCUCCUUUGUGAUUGUUGUUGACUUCAUUGUUGUUGCCGGCGCAUUUAUUGCAUGCGAUCAUCAUGACGUUCACAGCGACAACAA
.....((((......))))(((((((.(((.((((.((.(((((....(((.....)))..))))).)).)))).))).)))))))...... ( -23.30)
>DroSim_CAF1 16844 92 - 1
CUCCCUCGCUCCUUUGUGAUUGUUGUUGACUUCAUUGUUGUUGCCGGCGCAUUUAUUGCAUGCGAUCAUCAUGACGUUCACAGCGACAACAA
.....((((......))))(((((((.(((.((((.((.(((((....(((.....)))..))))).)).)))).))).)))))))...... ( -23.30)
>DroEre_CAF1 18634 92 - 1
CUCCCUCGCUCCUUUGUGAUUGUUGUUGAUUUCAUUGUUGUUGCCGGCGCAUUUAUUGCAUGUGAUCAUCAUGACGUUCACAGCGACAACAA
.....((((......))))...............((((((((((....(((.....))).(((((.(........).))))))))))))))) ( -23.10)
>DroYak_CAF1 16525 92 - 1
CUCCCUCGCUCCUUUGUGAUUGUUGUUGAUUGCAUUGUUGUUGCCGGCGCAUUUACUGCAUGUGAUCAUCAUGACGUUCACAGCGACAACAA
.....(((((.....((((.(((..(((((..(((.((((....))))(((.....))))))..))))..)..))).)))))))))...... ( -24.90)
>consensus
CUCCCUCGCUCCUUUGUGAUUGUUGUUGAUUUCAUUGUUGUUGCCGGCGCAUUUAUUGCAUGCGAUCAUCAUGACGUUCACAGCGACAACAA
.....((((......))))(((((((.(((.((((.((.(((((....(((.....)))..))))).)).)))).))).)))))))...... (-21.06 = -20.78 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:16 2006