Locus 604

Sequence ID X_DroMel_CAF1
Location 1,674,096 – 1,674,189
Length 93
Max. P 0.905846
window979

overview

Window 9

Location 1,674,096 – 1,674,189
Length 93
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 73.89
Mean single sequence MFE -32.62
Consensus MFE -15.80
Energy contribution -15.67
Covariance contribution -0.13
Combinations/Pair 1.12
Mean z-score -2.36
Structure conservation index 0.48
SVM decision value 1.04
SVM RNA-class probability 0.905846
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1674096 93 + 22224390
CUUUAAAUCCAUUUCGAUGGAUGUG----------------U---AGGUCCACACGCACAUGGCCACC-------AUCCGUC-CAUCCGACGGUGGUGGUGGCUGUGAUUCAGAGCCCUU
......((((((....))))))(((----------------(---..(....)..))))...((((((-------(.(((((-.....))))))))))))((((.((...)).))))... ( -35.70)
>DroSec_CAF1 8192 91 + 1
CUUUAAAUCCAUUUCGAUGGAUGUG----------------U---AUGUCCACACGCACAUGGACACC-------AUCCGUCCCAUCCGAGGGU---GGUGGCUGUGAUUCAGAGCCCUU
...............((((((((.(----------------(---..(((((........))))))))-------)))))))(((((....)))---)).((((.((...)).))))... ( -31.00)
>DroEre_CAF1 11753 104 + 1
UUUUAAAUCCAUUUCGAUGGAUGUAGGUCCACGUCCACGUCC---ACGUCCACACGCACAUGGACACC------CAACCUCU-CAUCGGAGG------GUGGCUGUGAUUCAGAGCCCUU
......((((((....))))))...((..((((.((((((((---(.((.(....).)).)))))...------...(((((-....)))))------)))).))))..))......... ( -31.50)
>DroYak_CAF1 10403 110 + 1
UUUUAAAUUCAUUUCGAUGGAUAUAGGUCC---UCCACGUCCACCAUGUCCACACGCACAUGGAUACCCCCAGCCAGCCGUC-CAUCCACGG------GUGGCUGUGAUUCAGAGCCCUU
......((((((....))))))..(((..(---((...(((..((((((.(....).)))))).......((((((.((((.-.....))))------.)))))).)))...))).))). ( -32.30)
>consensus
CUUUAAAUCCAUUUCGAUGGAUGUA________________C___AUGUCCACACGCACAUGGACACC_______AUCCGUC_CAUCCGAGG______GUGGCUGUGAUUCAGAGCCCUU
......((((((....)))))).........................(((((........)))))...................................((((.((...)).))))... (-15.80 = -15.67 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:14 2006