Locus 603

Sequence ID X_DroMel_CAF1
Location 1,673,477 – 1,673,597
Length 120
Max. P 0.684339
window978

overview

Window 8

Location 1,673,477 – 1,673,597
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 78.97
Mean single sequence MFE -28.96
Consensus MFE -13.24
Energy contribution -15.96
Covariance contribution 2.72
Combinations/Pair 1.08
Mean z-score -2.04
Structure conservation index 0.46
SVM decision value 0.31
SVM RNA-class probability 0.684339
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1673477 120 + 22224390
CAAUAAACGAAAUGCUCUUCGGGAGCAUCUUGUCCCAUUUCACGACCAAGAAAAAAAAAAAAAAGUAAAACCAGAAUUAAUUAAUUCCGCGAAUAGCUGUCGAAUCUGCAUUGGUACAGU
......((..(((((..(((((.(((.(((((((.........)).)))))......................(((((....)))))........))).)))))...))))).))..... ( -21.30)
>DroSec_CAF1 7573 119 + 1
CAAUGGACGAAAUGCUCUUCGGUAGCAUCUUGUCCCAUUUCACGACCAAGAAAAA-AAAAGAAAGUAAAACCGGAAUUAAUUAAUUCCGCGAAUAGCUGUCGAAGCUGCAUUGGUACAGU
....((((((.((((((....).))))).))))))......((.(((((......-..............((((((((....))))))).)..(((((.....)))))..)))))...)) ( -33.20)
>DroSim_CAF1 8359 117 + 1
CAAUGGACGAAAUGCUCUUCGGUAGCAUCUUGUCCCAUUUCACGACCAAGAAAA--AAAAGAAAGUAA-ACCGGAAUUAAUUAAUUCCGCGAAUAGCUGUCGAAGCUGCAUUGGUACAGU
....((((((.((((((....).))))).))))))......((.(((((.....--............-.((((((((....))))))).)..(((((.....)))))..)))))...)) ( -33.20)
>DroEre_CAF1 11126 116 + 1
CGCUGGACGAGUUGCUCUUGAGUAGCAUCUUGUCCCAUUUCACGUCCCACGA----CCAAGAAAGUAAAAACGGAAUUAAUUAAUUCCGCGGAUAGCUGUCGAAGCGCCAUUGGUACGGC
.((.(((((((.(((((....).)))).)))))))..............(((----((((...........(((((((....))))))).((...(((.....))).)).))))).)))) ( -35.30)
>DroYak_CAF1 9780 91 + 1
------------------CGAGGAGCAUCUUGUCCCAUUUCA-------CGA----CCAAGAAAGUACAACCGGAAUUAAUUAAUUCCGCGAAUAGCUGUCAAAGCUCCAUUGGUACGAC
------------------((((((((.(((((((........-------.))----.)))))..(.(((...((((((....))))))((.....))))))...))))).)))....... ( -21.80)
>consensus
CAAUGGACGAAAUGCUCUUCGGUAGCAUCUUGUCCCAUUUCACGACCAAGAAAA__AAAAGAAAGUAAAACCGGAAUUAAUUAAUUCCGCGAAUAGCUGUCGAAGCUGCAUUGGUACAGU
....((((((.(((((.......))))).))))))....................................(((((((....)))))))......((((((.((......)).).))))) (-13.24 = -15.96 +   2.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:13 2006