| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,672,567 – 1,672,671 |
| Length | 104 |
| Max. P | 0.539451 |
| Location | 1,672,567 – 1,672,671 |
|---|---|
| Length | 104 |
| Sequences | 4 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 78.87 |
| Mean single sequence MFE | -35.08 |
| Consensus MFE | -22.23 |
| Energy contribution | -23.23 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.539451 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1672567 104 - 22224390 GA---ACCAGAACAUUGUCUGGAAUUUCGGGCGGAGGUUCUUCAAGCCGACCUCCGUUGGCCACAAAAAGCGGCACGUAACAUAUGGAAACGCAGGGAAUGGC---GGUU .(---(((....((((.((((......((((((((((((.........)))))))))).(((.(.....).))).))........(....).)))).))))..---)))) ( -32.30) >DroSec_CAF1 6682 103 - 1 GA---ACCAG-ACAUUGUCUGGAAUUUCGGGCGGAGGUUCUUCAAGCCGACCUACGUUGGCCGCAAAAAGCGGCACGCAACAUAUGGAAAGGCAGGCAAUGGG---GGCU ..---.((..-.((((((((((((((((.....))))))))....(((..((((.(((((((((.....)))))...)))).)).))...))))))))))).)---)... ( -38.50) >DroSim_CAF1 7463 103 - 1 GA---ACCAG-ACAUUGUCUGGAAUUUCGGGUGGAGGUUCUUCAAGCCGACCUCCGUUGGCCGCAAAAAGCGGCACGCAACAUAUGGAAAGGCAGGCAAUGGC---GGCU ..---.((..-.(((((((((...((((....(((((((.........)))))))(((((((((.....)))))...)))).....))))..)))))))))..---)).. ( -39.20) >DroEre_CAF1 10263 89 - 1 --CAGGCCGG-ACAUUGUCUGGAAUUUUGG-CAACGCUUCUUCAA-----------------GCAAAAAGCGGCACGCAACAUGUGGAAACGCAGCCAGUGGCGGCGGCU --....((((-((...))))))......(.-...)((((....))-----------------))....(((.((.(((.((.((((....))))....)).))))).))) ( -30.30) >consensus GA___ACCAG_ACAUUGUCUGGAAUUUCGGGCGGAGGUUCUUCAAGCCGACCUCCGUUGGCCGCAAAAAGCGGCACGCAACAUAUGGAAACGCAGGCAAUGGC___GGCU .....(((....((((((((((((((((.....)))))))((((.((((((....))))))........(((...)))......))))....))))))))).....))). (-22.23 = -23.23 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:09 2006