Locus 600

Sequence ID X_DroMel_CAF1
Location 1,671,686 – 1,671,800
Length 114
Max. P 0.686960
window973

overview

Window 3

Location 1,671,686 – 1,671,800
Length 114
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 82.65
Mean single sequence MFE -25.46
Consensus MFE -17.44
Energy contribution -17.24
Covariance contribution -0.20
Combinations/Pair 1.10
Mean z-score -1.81
Structure conservation index 0.68
SVM decision value 0.32
SVM RNA-class probability 0.686960
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1671686 114 - 22224390
CCCCAUCC------CUAUACCCAUAUCCAUUCCCGGCCACAGCCCAUCCCUUCGAGCAUUUAACUGCCAUUCGGCGGGAAAUACUCUUCCAACGAUUCGGCCCACUUGGAUGGCAUCGCA
..((((((------......((..(((.......(((....)))..((((.(((((((......)))...)))).))))..............)))..)).......))))))....... ( -26.12)
>DroSec_CAF1 5801 120 - 1
CCCCAUCCCCAUUCCUAUCCCCAUCGCCAUUCCCGGCCACAGCCCAUCCCUUCGAGCAUUUCACUGCCAUUCGGCGGGAAAUACUCUUCCAACGAUUCGCCCCACUUGGAUGGCAUCGCA
.........................(((((((..(((....))).........(((.(((((.(((((....)))))))))).))).....................)))))))...... ( -29.90)
>DroSim_CAF1 6582 120 - 1
CCCCAUCCCCAUUCCUAUCCCCAUCGCCAUUCCCGGCCACAGCCCAUCCCUUCGAGCAUUUAACUGCCAUUCGGCGGGAAAUACUCUUCCAACGAUUCGCCCCACUUGGAUGGCAUCGCA
.........................(((((((..(((....)))..((((.(((((((......)))...)))).))))............................)))))))...... ( -25.60)
>DroEre_CAF1 9417 108 - 1
CCCCAUCC------CCAUCCCCAUCCCCAUUCCCAGGCA-----CAUCCCUUCGAACAUUUAACUGCCAUGCGGCGGGAAAUACACUGCCAAUGAUGCGCCCCACUUGGCUGUCAUCGA-
........------...............((((((((..-----....)))..............(((....))))))))............(((((((((......))).).))))).- ( -20.70)
>DroYak_CAF1 6857 102 - 1
------GU------CCAUCCCCAUAUCCAUUCGCAGGCA-----CAUCCCUUCGAACAUUUAACUGGCAUUCGGCGGGAAAUACUCUUCCAACGAUGCGCCGCACUUGGAUGUCAUCGA-
------..------........(((((((...((.(((.-----((((....((((..((.....))..))))(..((((......))))..))))).)))))...)))))))......- ( -25.00)
>consensus
CCCCAUCC______CUAUCCCCAUCGCCAUUCCCGGCCACAGCCCAUCCCUUCGAGCAUUUAACUGCCAUUCGGCGGGAAAUACUCUUCCAACGAUUCGCCCCACUUGGAUGGCAUCGCA
...................................((((.......((((.(((((((......)))...)))).))))........(((((.............)))))))))...... (-17.44 = -17.24 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:08 2006