Locus 60

Sequence ID X_DroMel_CAF1
Location 271,047 – 271,141
Length 94
Max. P 0.623242
window74

overview

Window 4

Location 271,047 – 271,141
Length 94
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 79.39
Mean single sequence MFE -23.80
Consensus MFE -14.43
Energy contribution -14.15
Covariance contribution -0.27
Combinations/Pair 1.36
Mean z-score -1.61
Structure conservation index 0.61
SVM decision value 0.18
SVM RNA-class probability 0.623242
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 271047 94 - 22224390
CAAUAGUGACAAUUUUACGUCUUAAUGGACCUCAAUGUGCAUUACAAAUUUGCUGUCUUG----------GGCAGCGG-UUUGCGUU-UGGAGUUUU--CACCAUACU----
.....((((.(((((((((...(((((.((......)).)))))((((((.(((((....----------.)))))))-))))))).-.)))))).)--)))......---- ( -22.40)
>DroGri_CAF1 39678 103 - 1
CAAUGGUGACAAUUUCACAUCUUAAUGCACAUGAAUGCGCGUUAAAAAUUUGCCGCCUUCUUUGACCCAAGGCGGCUACUUUUCGUU-UUC--CUUU--CAUUUUCCG----
....((.(((...........(((((((.((....)).)))))))......((((((((.........))))))))........)))-..)--)...--.........---- ( -24.00)
>DroSim_CAF1 40105 95 - 1
CAAUAGUGACAAUUUUACGUCUUAAUGGACCUCAAUGUGCAUUACAAAUUUGCUGUCUUG----------GGCAGCGG-UUUGCGUU-UGGAGUUUU--CACAAUACUA---
.....((((.(((((((((...(((((.((......)).)))))((((((.(((((....----------.)))))))-))))))).-.)))))).)--))).......--- ( -23.30)
>DroEre_CAF1 18798 94 - 1
CAAUGGUGACAAUUUUACGUCUUAAUGGACCUCAAUGUGCAUUACAAAUUUGCUGUCUUG----------GGCAGCGG-UUUGCGUU-UGGAGUUUU--CACAAUACU----
.....((((.(((((((((...(((((.((......)).)))))((((((.(((((....----------.)))))))-))))))).-.)))))).)--)))......---- ( -23.10)
>DroYak_CAF1 40477 93 - 1
CAAUGGUGACAAUUUUACGUCUUAAUGGACCUCAAUGUGCAUUACAAAUUUGCUGUCUUG----------GGCAGCGG-UUUG-GUU-UGGAGUUUG--CACAAUACU----
...((....)).......((((....)))).....((((((...((((((((((((....----------.)))))).-...)-)))-)).....))--)))).....---- ( -24.60)
>DroAna_CAF1 27173 100 - 1
CAAUGGUGACAAUUUCACGUCUUAAUGCACCUCAAUGUGCAUUAAAAAU-UGCCGCCUUU----------CUUGGCGG-UCUGCCUUAUGGAUCUCUAGUACAAUACUUUUG
....((((((........)))(((((((((......)))))))))....-.((((((...----------...)))))-)..)))...(((....))).............. ( -25.40)
>consensus
CAAUGGUGACAAUUUUACGUCUUAAUGGACCUCAAUGUGCAUUACAAAUUUGCUGUCUUG__________GGCAGCGG_UUUGCGUU_UGGAGUUUU__CACAAUACU____
.....(((..............(((((.((......)).)))))((((.((((((((.............)))))))).))))................))).......... (-14.43 = -14.15 +  -0.27)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:39 2006