Locus 6

Sequence ID X_DroMel_CAF1
Location 22,118 – 22,238
Length 120
Max. P 0.922818
window7

overview

Window 7

Location 22,118 – 22,238
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 94.31
Mean single sequence MFE -51.53
Consensus MFE -45.38
Energy contribution -46.00
Covariance contribution 0.62
Combinations/Pair 1.08
Mean z-score -2.14
Structure conservation index 0.88
SVM decision value 1.15
SVM RNA-class probability 0.922818
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 22118 120 + 22224390
CGAGGAGGAACGACUCGUCGCCUUCUGGCUGUGGUAGCCUAGGACGCACUUCCUCCACGCCUGGGCGAUCGUUGACUCCUGGACGAACCGGAGUUGGUGCCUCGCCAACUGGUAGUCUAA
..(((((...((((..(((((((...(((.((((......((((......))))))))))).))))))).)))).)))))((((..(((..((((((((...))))))))))).)))).. ( -51.00)
>DroSec_CAF1 9438 120 + 1
CGAGGAGGAAUGACUCCUCGCCUUCUGGAGGUGGUAGCCUAGGACGCACUUCCUCCACGCCCGGGCGAUCAUUGACUCCUGGACGAACCGGAGUCGGUGCCUCGCCAACUGGUAGUCUAA
(((((((......))))))).....((((((.(((.((.......))))).)))))).(((..(((((.((((((((((.((.....))))))))))))..)))))....)))....... ( -53.40)
>DroSim_CAF1 9531 120 + 1
CGAGGAGGAACGACUCCUCGCCUUCUGGAGGUGGUAGCCUAGGACGCACUUCCUCCACGCCCGGGCGAUCAUUGACUCCUGGACGAACCGGAGUCGGUGCCUCGCCAACUGGUAGUCUAA
(((((((......))))))).....((((((.(((.((.......))))).)))))).(((..(((((.((((((((((.((.....))))))))))))..)))))....)))....... ( -53.40)
>DroYak_CAF1 4218 120 + 1
CAAGGAGGAACGACUCCUCGCCUUCUGGCGGUGGUAGCCUAGGACGCACUGCCUCCACGCCCGGGCGAUCAUUGACUCCUGGAAGAACUGGAGUUGGUGCCUCGCCAACAGGUAGUUUAA
..(((((......)))))((((....))))((((..((..((......))))..))))(((..(((((.(((..(((((.(......).)))))..)))..)))))....)))....... ( -48.30)
>consensus
CGAGGAGGAACGACUCCUCGCCUUCUGGAGGUGGUAGCCUAGGACGCACUUCCUCCACGCCCGGGCGAUCAUUGACUCCUGGACGAACCGGAGUCGGUGCCUCGCCAACUGGUAGUCUAA
(((((((......))))))).....((((((..((.((.......))))..)))))).(((..(((((.((((((((((.((.....))))))))))))..)))))....)))....... (-45.38 = -46.00 +   0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:00 2006