Locus 586

Sequence ID X_DroMel_CAF1
Location 1,655,016 – 1,655,120
Length 104
Max. P 0.659861
window934

overview

Window 4

Location 1,655,016 – 1,655,120
Length 104
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 87.03
Mean single sequence MFE -27.30
Consensus MFE -23.08
Energy contribution -23.57
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.53
Structure conservation index 0.85
SVM decision value 0.27
SVM RNA-class probability 0.659861
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1655016 104 - 22224390
GGGUCAGCA--------ACACAUGUUAACGGGCCGAAAAAUAAUUGACAAAUUCCACAUUUAUUCGCUUUGCUGAUUGAUGCCUAGCA--CGGCCCCGAGAAUUGCCCUUUU------CA
((((.((((--------.....))))...((((((...(((((.((..........)).))))).(((..((........))..))).--))))))........))))....------.. ( -25.40)
>DroSec_CAF1 19849 110 - 1
GGGUCAGCAACACAGCAACACAUGUUAACGGGCCGAAAAAUAAUUGACAAAUUCCACAUUUAUUCGCUUUGCUGAUUGAUGCCUAGCA--CGGCCCCG--AAUUGCCCUUUU------CU
((((..((......)).............((((((...(((((.((..........)).))))).(((..((........))..))).--))))))..--....))))....------.. ( -26.40)
>DroSim_CAF1 9103 110 - 1
GGGUCAGCAACACAUCAACACAUGUUAACGGGCCGAAAAAUAAUUGACAAAUUCCACAUUUAUUCGCUUUGCUGAUUGAUGCCUAGCA--CGGCCCCG--AAUUGCCCUUUU------CU
(((.(((....((((......))))....((((((...(((((.((..........)).))))).(((..((........))..))).--))))))..--..))))))....------.. ( -25.30)
>DroYak_CAF1 20465 107 - 1
GGG------------CAACACAUGUUAACGGGCCGAAAAAUAAUUGGCAAAUUGCACAUUUAUUCGCUUUGCUGAUUGAUGCCUAGCACACGGCCCCGA-AAUUGCCCUUUUGCUUUCCU
(((------------((((....)))...((((((...(((((.((((.....)).)).))))).(((..((........))..)))...))))))...-....))))............ ( -32.10)
>consensus
GGGUCAGCA______CAACACAUGUUAACGGGCCGAAAAAUAAUUGACAAAUUCCACAUUUAUUCGCUUUGCUGAUUGAUGCCUAGCA__CGGCCCCG__AAUUGCCCUUUU______CU
((((............(((....)))...((((((...(((((.((..........)).))))).(((..((........))..)))...))))))........))))............ (-23.08 = -23.57 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:35 2006